usb1 (usb1)


Basic Information

Item Value
gene id usb1
gene name usb1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 32913231 ~ 32918975 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809060.1
AAACGTCACGATGAAAGATAGGCTTAGCTATATGTATTTTTGACTTAAGGGTTTCTTTAAGGCCTCATATATGCACTGTTATACACATATTGAGGCAACCTCTGAGAAGTATGAAAGTGGAACTGATTCGAGGATGTTGGTTGGCTACAGCAGCAGCTCGGAGGAGGAAAGCGAGTCGTCGGCGGCAGCAGCGACTGATCGAAACAAAAGTTCTTCTCGAAAGTGTCAAGAGGAAGATGATGCTAACAATGGCAGCCCAGCgagaaagaaacacaaaattGAGGAACAGGTTCCTAAAACGAGGCTGCCTCTTCCTGGTTGCCTGTTGGCCATGTTTCCAGATGAAGTGGGCTCACAGACTGAAGACAGCTCTCTTCATGGTGGACGCGTGCGCTCTTTTAAACATGAGAGAGGCAACTGGGCTACCTATGTTTATTTGCCATACCATCCTGAGGAGGAGTTCAGGGAGTTGTTGGAGGAGCTGCTCTCACTAGCCGGGGACCATGGTGTGGTTTTGACCCCGCAGGAGGAGTTCCACCTCAGCTTGTCTAAGACGGTGGTGCTCAGACACCACTGGATCCAAACCTTCACCCAGAGCCTCAGGGCAGGCCTGGTGCACTGCAAGAGGTTTGTGTGCTCAGCAGGGAGACTGAGGGTCTATTGTAACGCTGAGAGGACGAGGACGTTTCTGGGGATGGAAGTGTGTACTGGGCATGCTCAGTTGTTGGACCTGAGCCAAGTACTGGACAGAACAATGACAGAGTTTCACCTGGACACTTTCTATAAGGATCCATCTTTCCACGTAAGTCTGGCCTGGTGTGTTGGAGacttgacaggacagatgaaggaGTGCATTCAGGAGATGCAGAGACTGATTGATGACCACGAAGAAGGACCATTTCTGCTGAGGCTGGACTGCGTGGAGCTGCGCTGCAGGACGGGAAACAAGACCTTTCGCTTCCCTCTGGAGCCCTAAAATTGGACATATGTATACCCTGACCATTCGTCCTTTACAGCTGTGATCCTCTGAGTCACATAAATGAGCTGGAAACGTACCAATTTAGTGGTGCAAAGATTATATGTTGTATTCCATTAATAACGGCTGACAGATATGTGGCATGTCACAACAaagatagtctatatccacgacgttccacttccgggattgctccggtccCGCAGAAAATTCCGcaggatgcatgtcttttcgtcCGATGTCCGCTTCCTTCCAtcggaattctaaactccggtggatttatgaggactatggctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaatcttgaGTTTTCTGtagcacgactaaaacaacttttgaacgtacacatgttccacggCACCGTGGCTGCAtatggagcttagcaccgccgaagacgattgtgattggtttaaagaaatactaataaaccagagcacctttTTCTACCATCCCGGAAGCGATATtaacgaatcccactatggccactccaagacccgcccttcaatagcgttCACagactactattggccaggcgtccatgcttacatgtacaggtcctatcccctgaccaatcccct
>XM_039809061.1
ATTCCGGTTGTCCTAATGAGTAAAAGGATGTTGGTTGGCTACAGCAGCAGCTCGGAGGAGGAAAGCGAGTCGTCGGCGGCAGCAGCGACTGATCGAAACAAAAGTTCTTCTCGAAAGTGTCAAGAGGAAGATGATGCTAACAATGGCAGCCCAGCgagaaagaaacacaaaattGAGGAACAGGTTCCTAAAACGAGGCTGCCTCTTCCTGGTTGCCTGTTGGCCATGTTTCCAGATGAAGTGGGCTCACAGACTGAAGACAGCTCTCTTCATGGTGGACGCGTGCGCTCTTTTAAACATGAGAGAGGCAACTGGGCTACCTATGTTTATTTGCCATACCATCCTGAGGAGGAGTTCAGGGAGTTGTTGGAGGAGCTGCTCTCACTAGCCGGGGACCATGGTGTGGTTTTGACCCCGCAGGAGGAGTTCCACCTCAGCTTGTCTAAGACGGTGGTGCTCAGACACCACTGGATCCAAACCTTCACCCAGAGCCTCAGGGCAGGCCTGGTGCACTGCAAGAGGTTTGTGTGCTCAGCAGGGAGACTGAGGGTCTATTGTAACGCTGAGAGGACGAGGACGTTTCTGGGGATGGAAGTGTGTACTGGGCATGCTCAGTTGTTGGACCTGAGCCAAGTACTGGACAGAACAATGACAGAGTTTCACCTGGACACTTTCTATAAGGATCCATCTTTCCACGTAAGTCTGGCCTGGTGTGTTGGAGacttgacaggacagatgaaggaGTGCATTCAGGAGATGCAGAGACTGATTGATGACCACGAAGAAGGACCATTTCTGCTGAGGCTGGACTGCGTGGAGCTGCGCTGCAGGACGGGAAACAAGACCTTTCGCTTCCCTCTGGAGCCCTAAAATTGGACATATGTATACCCTGACCATTCGTCCTTTACAGCTGTGATCCTCTGAGTCACATAAATGAGCTGGAAACGTACCAATTTAGTGGTGCAAAGATTATATGTTGTATTCCATTAATAACGGCTGACAGATATGTGGCATGTCACAACAaagatagtctatatccacgacgttccacttccgggattgctccggtccCGCAGAAAATTCCGcaggatgcatgtcttttcgtcCGATGTCCGCTTCCTTCCAtcggaattctaaactccggtggatttatgaggactatggctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaatcttgaGTTTTCTGtagcacgactaaaacaacttttgaacgtacacatgttccacggCACCGTGGCTGCAtatggagcttagcaccgccgaagacgattgtgattggtttaaagaaatactaataaaccagagcacctttTTCTACCATCCCGGAAGCGATATtaacgaatcccactatggccactccaagacccgcccttcaatagcgttCACagactactattggccaggcgtccatgcttacatgtacaggtcctatcccctgaccaatcccct
>XM_039809062.1
TAAACGTCACGATGAAAGATAGGCTTAGCTATATGTATTTTTGACTTAAGGGTTTCTTTAAGGCCTCATATATGCACTGTTATACACATATTGAGGCAACCTCTGAGAAGTATGAAAGTGGAACTGATTCGAGGATGTTGGTTGGCTACAGCAGCAGCTCGGAGGAGGAAAGCGAGTCGTCGGCGGCAGCAGCGACTGATCGAAACAAAAGTTCTTCTCGAAAGTGTCAAGAGGAAGATGATGCTAACAATGGCAGCCCAGCgagaaagaaacacaaaattGAGGAACAGGTTCCTAAAACGAGGCTGCCTCTTCCTGGTTGCCTGTTGGCCATGTTTCCAGATGAAGTGGGCTCACAGACTGAAGACAGCTCTCTTCATGGTGGACGCGTGCGCTCTTTTAAACATGAGAGAGGCAACTGGGCTACCTATGTTTATTTGCCATACCATCCTGAGGAGGAGTTCAGGGAGTTGTTGGAGGAGCTGCTCTCACTAGCCGGGGACCATGGTGTGGTTTTGACCCCGCAGGAGGAGTTCCACCTCAGCTTGTCTAAGACGGTGGTGCTCAGACACCACTGGATCCAAACCTTCACCCAGAGCCTCAGGGCAGGCCTGGTGCACTGCAAGAGGACGTTTCTGGGGATGGAAGTGTGTACTGGGCATGCTCAGTTGTTGGACCTGAGCCAAGTACTGGACAGAACAATGACAGAGTTTCACCTGGACACTTTCTATAAGGATCCATCTTTCCACGTAAGTCTGGCCTGGTGTGTTGGAGacttgacaggacagatgaaggaGTGCATTCAGGAGATGCAGAGACTGATTGATGACCACGAAGAAGGACCATTTCTGCTGAGGCTGGACTGCGTGGAGCTGCGCTGCAGGACGGGAAACAAGACCTTTCGCTTCCCTCTGGAGCCCTAAAATTGGACATATGTATACCCTGACCATTCGTCCTTTACAGCTGTGATCCTCTGAGTCACATAAATGAGCTGGAAACGTACCAATTTAGTGGTGCAAAGATTATATGTTGTATTCCATTAATAACGGCTGACAGATATGTGGCATGTCACAACAaagatagtctatatccacgacgttccacttccgggattgctccggtccCGCAGAAAATTCCGcaggatgcatgtcttttcgtcCGATGTCCGCTTCCTTCCAtcggaattctaaactccggtggatttatgaggactatggctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaatcttgaGTTTTCTGtagcacgactaaaacaacttttgaacgtacacatgttccacggCACCGTGGCTGCAtatggagcttagcaccgccgaagacgattgtgattggtttaaagaaatactaataaaccagagcacctttTTCTACCATCCCGGAAGCGATATtaacgaatcccactatggccactccaagacccgcccttcaatagcgttCACagactactattggccaggcgtccatgcttacatgtacaggtcctatcccctgaccaatcccct

Function

symbol description
usb1 Predicted to enable 3'-5'-exoribonuclease activity. Acts upstream of or within neutrophil differentiation and regulation of RNA splicing. Predicted to be active in nucleus. Is expressed in several structures, including gonad; head; heart; liver; and pectoral fin. Used to study ablepharon macrostomia syndrome and poikiloderma with neutropenia. Human ortholog(s) of this gene implicated in poikiloderma with neutropenia. Orthologous to human USB1 (U6 snRNA biogenesis phosphodiesterase 1).

NR:

description
U6 snRNA phosphodiesterase isoform X2

GO:

id name namespace
GO:0034477 U6 snRNA 3'-end processing biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0004518 nuclease activity molecular_function

KEGG:

id description
K23093 USB1; U6 snRNA phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809060.1 True 1601 mRNA 0.49 8 32914342 32918975
XM_039809061.1 False 1495 mRNA 0.50 8 32913231 32918975
XM_039809062.1 False 1548 mRNA 0.49 7 32914341 32918975

Neighbor

gene id symbol gene type direction distance location
snrkb LOC107103095,LOC101069520,LOC107389226 coding upstream 153730 32737802 ~ 32759501 (+)
LOC120564018 NA coding upstream 176425 32719505 ~ 32736806 (+)
LOC120564017 NA coding upstream 195794 32705734 ~ 32717437 (+)
LOC120564016 LOC100694473,LOC102308285,LOC101472020,LOC103379534,LOC102194645 coding upstream 218841 32669278 ~ 32694390 (+)
LOC120563342 LOC106532362 coding upstream 346486 32565259 ~ 32566745 (+)
uba2 uba2 coding downstream 27718 32946693 ~ 32961444 (+)
ca5a ca5a,LOC104941612 coding downstream 45280 32964255 ~ 32988098 (+)
slc7a5 slc7a5 coding downstream 99420 33018395 ~ 33049917 (+)
zcchc14 zcchc14 coding downstream 312403 33231378 ~ 33295605 (+)
tsnaxip1 NA coding downstream 515022 33433997 ~ 33444330 (+)
G89538 NA non-coding upstream 209 32912283 ~ 32913022 (+)
G89526 NA non-coding upstream 28522 32884455 ~ 32884709 (+)
G89525 NA non-coding upstream 28997 32883923 ~ 32884234 (+)
G89507 NA non-coding upstream 121998 32790537 ~ 32791233 (+)
G89506 fa2h non-coding upstream 123128 32789848 ~ 32790103 (+)
G89541 pla2g15,LOC104948923,LOC108246911,LOC103379465,LOC107103093,LOC107103416 non-coding downstream 3407 32922382 ~ 32925940 (+)
G89546 NA non-coding downstream 24442 32943417 ~ 32984484 (+)
G89550 NA non-coding downstream 82285 33001260 ~ 33001589 (+)
G89553 NA non-coding downstream 88837 33007812 ~ 33008153 (+)
G89616 map1lc3b non-coding downstream 385751 33304726 ~ 33318892 (+)
G89540 znf319,LOC104967809,LOC102797175 other upstream 1504 32905936 ~ 32911727 (+)
LOC120564557 ccdc73 other upstream 285557 32593584 ~ 32627674 (+)
G89409 NA other upstream 416669 32490143 ~ 32496562 (+)
LOC120564413 NA other upstream 943742 31964413 ~ 31969489 (+)
LOC120564288 LOC106676433,LOC101470282,LOC102193107,LOC103142492,LOC103466241,LOC102310553 other upstream 1231072 31540981 ~ 31682159 (+)
klhdc4 klhdc4,LOC104957904,LOC104953735 other downstream 166881 33085856 ~ 33115541 (+)
jph3b jph3,LOC103360672 other downstream 199226 33118201 ~ 33230110 (+)
G89811 LOC100698998 other downstream 1441509 34360484 ~ 34362377 (+)
G89813 NA other downstream 1462861 34381836 ~ 34421181 (+)
G89836 NA other downstream 1515114 34434089 ~ 34435317 (+)

Expression


Co-expression Network