RNA id: TU123934


Basic Information

Item Value
RNA id TU123934
length 1678
lncRNA type read_through
GC content 0.44
exon number 5
gene id G92070
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1418749 ~ 1676140 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCCCCTCTGCTCTATATCATCTGATATGATCAACACAAGGTTAATAAGACATGCACAGATACATGTGTAGTCACTTTATAAGTCAtccttcttaaaataaataaacgaaAAGGTACGAGTTCAgtcagaaaaacacagagaacaACCAGAGTTTCCAGTCCAGCCTGTAGTCCAGTCTGTGGTCCAGTCTGTGGTCCAGTCTGTGGTCCAGCAGCTCAGAGACATACAAGCTAAGATAAGCAGTCATGTTTTATAAGAGAGTATAGATGGCGTCCAATAAACACAGGCCATGCTTTCTACTTcctgtagaagaagaagaagaagaagaagaagaagaggaaggtaTAAACAGCCAGATGttgtaaacattcggggctcTGAGCCCAAaccgagcacacacacatttctgtccTACGTTACAGCGGATATTTGATAACAGAATTAATACCTCAAAATCTGTACATTAGTTAGAgacaaatgatgatgatgatgatgataggtACCAAAGAAaaaccttctctctctctctttctctccctctctctctgtcactgtaCATGCAGACGTGTTTAATAAAGTTTATTAATATACAATCAGTCCTCTCCGTCCGAGGAAAAGTCCCATTCTgtcccaaagaagaagaagaagaagaagaagaagaagaagaagtaacCAGCTCGTTGCCAGTCACATATTTACGAGCTGGAACTAGTCCTTGCCAGACAGCAGCGTATCCATCCGCCCAGCGTCTCAGTGTGTCTCCAGAGAGGCTCTGTTATATGAGTGTATAATGTCTCAGAAGTctgtagctacacacacacacacacacattctccctCCCATCTCCTAAAATACAGACGCCTGGTCAGGTGACTTTGCCGTTGTTATGGACAccaaaagtctcctttagcgccaGATCTAAACGCCTTTAGCCAGGACTGCTGGCGTAACCTTTTGACACAGTTCTGTGAAGGAAAAGCTCGTGGGTGTGCTTATAGAAAGGTACGTTTATGGGACCTGAtgcccggtctcctgggtgatagTCCCCCCACGCAAGATTTTCGACCTTTCATACGTagcatgacgtagcattaagagctaGCACGCGAAGGCAgcgtccctccagaaaaatgcgattatgcgataGCATAATTCAacataatcagccaaagccCATATCTATATCACCAACGCACTTTGCGCctcataaattgccgatttccacgcaaaaatATTTGGGgctttgcatgatttcataattcccgcattttcgttgcattaagtcccataatatatctcagcaggaagttgaaaaatgttgcgttcacttcacacaagagcagccattttccagtccttccagaaaaaaagCGAGCCAAATGTTTTGTGATTCTTGAGGCAAAACTCCTAGATTATGCGCAcgcgttttcttaaaaaatgcgatggaatattcTATatgtgatatttatgcaattttatgcgatgaaactTGCAAAAtggcagtttgatgaaaaagagaaaaAAAAGTGACTGTTTGAATCCCTCGGGGACGAACCGAGTCTTTAGTCCAGACTGAAGCCGAAACCGGGACCCAGACGCTCCAGGTCTTGGTGTGTCGCAGCTTCCATCGGGCCCAAAACCCTCTCAAGATACCGAATCACTTCAGTCCATCACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124096 lncRNA upstream 5878 1391329 ~ 1412871 (+) False G92183
TU124095 lncRNA upstream 5878 1412482 ~ 1412871 (+) True G92183
TU123951 lncRNA upstream 11067 1356878 ~ 1407682 (+) True G92076
TU123959 lncRNA upstream 15822 1385398 ~ 1402927 (+) True G92084
TU123957 lncRNA upstream 30872 1387509 ~ 1387877 (+) True G92082
XR_005640239.1 lncRNA downstream 23280 1699420 ~ 1700502 (+) True LOC120565416
TU124172 lncRNA downstream 57426 1733566 ~ 1752952 (+) True G92247
TU124174 lncRNA downstream 67635 1743775 ~ 1777830 (+) True G92248
TU124185 lncRNA downstream 128329 1804469 ~ 1830857 (+) True G92257
TU124204 lncRNA downstream 198746 1874886 ~ 1876314 (+) False LOC120565570
XM_039812460.1 mRNA upstream 37835 1322405 ~ 1380914 (+) True LOC120566171
XM_039811451.1 mRNA upstream 190070 1222333 ~ 1228679 (+) True trmt13
XM_039811799.1 mRNA upstream 393606 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 409536 983651 ~ 1009213 (+) True med16
XM_039811566.1 mRNA upstream 463513 891578 ~ 955236 (+) False grin3bb
XM_039811456.1 mRNA downstream 191581 1867721 ~ 1889087 (+) True LOC120565570
XM_039811232.1 mRNA downstream 215414 1891554 ~ 1908999 (+) True serpinc1
XM_039811233.1 mRNA downstream 217562 1893702 ~ 1908999 (+) False serpinc1
XM_039811459.1 mRNA downstream 304698 1980838 ~ 1993868 (+) True LOC120565574
XM_039811460.1 mRNA downstream 318679 1994819 ~ 2024965 (+) False LOC120565575
TU124067 other upstream 162555 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 193941 1220810 ~ 1224808 (+) False trmt13
TU124057 other upstream 193941 1221373 ~ 1224808 (+) False trmt13
TU124050 other upstream 214703 1202887 ~ 1204046 (+) True G92157
TU124034 other upstream 248703 1168821 ~ 1170046 (+) True G92146
TU124157 other downstream 20834 1696974 ~ 1804395 (+) True G92234
TU124195 other downstream 191512 1867652 ~ 2000993 (+) True G92264
TU124197 other downstream 191512 1867652 ~ 1996750 (+) False G92264
TU124125 other downstream 312668 1988808 ~ 2025931 (+) True LOC120565575
TU124251 other downstream 396042 2072182 ~ 2076104 (+) True G92293

Expression Profile