RNA id: XR_005640234.1


Basic Information

Item Value
RNA id XR_005640234.1
length 1040
lncRNA type inter_gene
GC content 0.55
exon number 4
gene id LOC120565410
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1463719 ~ 1535856 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGCTGTGATTGGTCGGCACGGTGACAGAGGGGCGGGGATGTGAGATTACAGCATCTCTCCGTCTCTCGGTGCTGATACAGCGGACATCTGGAGCTGCCCTGCCCGGGAATCAAAGCCCCGAACGCCGCCGAGACAGCCCGAGTTCGCTCTCTGTTTCGCGGGGAAAACGCCCGAGCGTGCtccgttgttgttgttttcgcGCCTTTCGGGCTGGATCTAACGTCTCGAGACTGCAACGGACGGACCCTTTCTGCCGGTAAAAACACAGAAACTACGGATAAATCCCGGGAGAACGGTGATGGACTGAAGTGATCCGGTATCTGAGAGGGTTTTGGGCCCGATGGAAGCTGCGACACACCAAGACCTGGAGCGTCTGGGTCCCGGTTCCGGCTTCAGTCTGGACTAAAGACTCGGTTCGTCCCCGAGGGATTCAAACAGTCACTTCTTTTCTCCGGTAAACGGGCCCAAACCGGCGGATCAGGACCGTTCTGGGGGTATTTTAACAActatatttgcatattttattaatatttagttGAGATATTTGGATATGCAGCGTTTTCGTGGATTAACACCCAGCGGGATCATGTGTCccccctcctctgctcctctaATCCGGGTTTAAATCTGAGATCTGATCTGGATTACTCTGCTCCTCCGTTACATCTGTCCCGGGCTGAACCGGTCCCGGTCCCGATCCCTGGGGGATCTCGGATCCGGTCCTGGTTTTACGGAGTTCTGCTGTCAGATATTATCTAGGACTCGGTATCGGTTGCTCTCGGTCCTGGTTTCGGGGAGTTCTGCTGTCGCCATGCCGACGTCCCGGCCTGGTTCGGAGCCAGTGGAGTTCTGGGTGGACGGGTCGAGGCGGGACGGGGCGGTGGAGGAGTTCTACACCCTGAGTACCGAGCTGGGACGAGGAGCCACGTCCATCGTGTATCGCTGCGAGGAGAAACAGACTCAGAAACCCTACGCCATCAAAGTCCTCAAGAAAACGATCGACAAGAAAATAGTTCGGTGACAGAATCGTGTGTCCTG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640235.1 lncRNA upstream 27105 1433658 ~ 1436614 (+) True LOC120565412
TU123933 lncRNA upstream 43180 1418749 ~ 1420539 (+) True G92070
TU124096 lncRNA upstream 50848 1391329 ~ 1412871 (+) False G92183
TU124095 lncRNA upstream 50848 1412482 ~ 1412871 (+) True G92183
TU123951 lncRNA upstream 56037 1356878 ~ 1407682 (+) True G92076
XR_005640237.1 lncRNA downstream 26991 1494808 ~ 1495367 (+) True LOC120565414
TU123963 lncRNA downstream 101551 1569368 ~ 1604303 (+) True G92088
TU123958 lncRNA downstream 110702 1578519 ~ 1615013 (+) True G92083
TU124110 lncRNA downstream 114345 1582162 ~ 1582542 (+) True G92195
TU124108 lncRNA downstream 114827 1582644 ~ 1583710 (+) True G92194
XM_039812460.1 mRNA upstream 82805 1322405 ~ 1380914 (+) True LOC120566171
XM_039811451.1 mRNA upstream 235040 1222333 ~ 1228679 (+) True trmt13
XM_039811799.1 mRNA upstream 438576 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 454506 983651 ~ 1009213 (+) True med16
XM_039811566.1 mRNA upstream 508483 891578 ~ 955236 (+) False grin3bb
XM_039811453.1 mRNA downstream 70182 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 157757 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 168146 1635963 ~ 1637498 (+) True sid1
XM_039811456.1 mRNA downstream 399904 1867721 ~ 1889087 (+) True LOC120565570
XM_039811232.1 mRNA downstream 423737 1891554 ~ 1908999 (+) True serpinc1
TU124067 other upstream 207525 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 238911 1220810 ~ 1224808 (+) False trmt13
TU124057 other upstream 238911 1221373 ~ 1224808 (+) False trmt13
TU124050 other upstream 259673 1202887 ~ 1204046 (+) True G92157
TU124034 other upstream 293673 1168821 ~ 1170046 (+) True G92146
TU124120 other downstream 111138 1578955 ~ 1910061 (+) True G92201
TU124157 other downstream 229157 1696974 ~ 1804395 (+) True G92234
TU124195 other downstream 399835 1867652 ~ 2000993 (+) True G92264
TU124197 other downstream 399835 1867652 ~ 1996750 (+) False G92264
TU124125 other downstream 520991 1988808 ~ 2025931 (+) True LOC120565575

Expression Profile