RNA id: XM_039811245.1


Basic Information

Item Value
RNA id XM_039811245.1
length 830
RNA type mRNA
GC content 0.50
exon number 5
gene id reep6
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 2371988 ~ 2380260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCAAAGCCATCGAAAGTCTGAGCAAAGAAGACGACACCAAATGGCTGACGTACTGGGTGGTGTACGGTGTCTTCAGCCTGGGAGAGTTCTTCTCCGACATCTTCCTCTACTGGTTCCCCTTCTACTACGCCTTTAAGTGTCTCTTCCTGTTGTGGTGCATGGCTCCGGTGTCGTGGAACGGCTCCCAGATTATCTACGACAAAGTGGTTCGGCCCATCTTCCTCCGCCACGAGGCCACGGTGGACAACATGGTGAGCGACCTCGGCGGCAGAGCCATGAACGCCGCCGAGAACCTCACCAGAGAAGTCCTGTGCCATCTGATGAAGAACAAAGCCCTGGTGACTCCGGGGCCGTCGGCCAATCAGCAGGAAGCTATCAGTTTACCGAGTTCCTCAGCGGCTCGAGTCGCTCCATCAGAGCCGAgcatagaagaagaagaacggcCGCCTTTCCTTGGTTGACCGTCCTTCAGATAGCagcggaggaagaggagaagcctccgggaggaagaggaagagccttcagggaggaagaggaggagcctcatggaggaagaggagtccTCTTCACCATCACAGCGAGAAGAATCCCTCCTGCTGTCAAAGAGACTAATGTCCTATATCACATCAGATACGTTATATTTATTCATACCCCAGTCTGTAACGTGAACTCAGACAGACTGTGATGTTACAAACATGTTTccttattgttttcattttatttattcataggTTATTTATTAATGAATTCTGTGCTCAGTGGGATGTTTAGTTTTTAGACGATGAAGCACCTGCGAATAAAACCAAAAGGCTCAACTTCTCTGCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124349 lncRNA upstream 2382 2366120 ~ 2369672 (+) False G92333
TU124268 lncRNA downstream 4795 2384646 ~ 2391209 (+) True G92305
XR_005640249.1 lncRNA downstream 55565 2435416 ~ 2440275 (+) True LOC120565447
TU124754 lncRNA downstream 56362 2436213 ~ 2436473 (+) True G92577
TU124764 lncRNA downstream 69732 2449583 ~ 2533166 (+) True G92587
XR_005640247.1 lncRNA downstream 100567 2480418 ~ 2480860 (+) True LOC120565445
XM_039811243.1 mRNA upstream 300151 2050962 ~ 2071903 (+) False dph5
XM_039811242.1 mRNA upstream 309050 2050964 ~ 2063004 (+) True dph5
XM_039811460.1 mRNA upstream 347089 1994819 ~ 2024965 (+) False LOC120565575
XM_039811459.1 mRNA upstream 378186 1980838 ~ 1993868 (+) True LOC120565574
XM_039811232.1 mRNA upstream 463055 1891554 ~ 1908999 (+) True serpinc1
XM_039811234.1 mRNA downstream 32380 2412231 ~ 2420605 (+) True LOC120565427
XM_039811235.1 mRNA downstream 44136 2423987 ~ 2427127 (+) False LOC120565428
XM_039811236.1 mRNA downstream 44182 2424033 ~ 2427127 (+) True LOC120565428
XM_039811240.1 mRNA downstream 70680 2450531 ~ 2461597 (+) True LOC120565432
XM_039811224.1 mRNA downstream 206664 2586515 ~ 2593983 (+) True LOC120565421
TU124333 other upstream 3738 2366120 ~ 2368316 (+) False G92333
TU124251 other upstream 295950 2072182 ~ 2076104 (+) True G92293
TU124125 other upstream 346123 1988808 ~ 2025931 (+) True LOC120565575
TU124195 other upstream 371061 1867652 ~ 2000993 (+) True G92264
TU124750 other downstream 153893 2533744 ~ 2582371 (+) True G92575
TU124983 other downstream 602375 2982226 ~ 2983014 (+) True G92770
TU124998 other downstream 630823 3010674 ~ 3014853 (+) False G92773
TU124988 other downstream 631915 3011766 ~ 3094410 (+) True G92773
TU124992 other downstream 631915 3011766 ~ 3094410 (+) False G92773

Expression Profile