RNA id: XR_005640263.1


Basic Information

Item Value
RNA id XR_005640263.1
length 1334
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120565491
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10204140 ~ 10297258 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGAGGCCGGGACTTTAGCCGTGGCCCATGTGAAAATTATAACGAAGCAATATGACAATTAATTGCTTCATTATGGGTAAAGAATTGCATCACTGTACCTTGGCATAGGCTAGGTAAGAAAAACCCGCCTTTATTAATCATTGCACCACCATGGTAGCACGTTTAGGGACGCAATTCAAACACACCTGTTGCTGGCTAACGTTCGGCCTGGCTAACAGGCTAAATGCTCATGGTGGGTCCTCCAACGGTGACTTCTTCGTTCACTGAGGAAGCTTTACCTTTAATGAGGTGTATGTGAGGGCCATCTACTGCCTGTGATAATAATCCCTGGGACAGAGAGACTAAGTGGACTGGTTATATTGGGAATAAACAAGCAGAGAAATGGAACCTGGAGCAGATTGAGGACTTCGCAGGGCTTCGTGCACAGTGACAGGACTCGCAGAAGGCCGCTCCGAAAGGCTACATCTGCAATTTGAGCCACAACAGGGAGATTTTGAGCATGCCAAGCAACTTTCAAGGAAAATGTTCACGTGTCTGATAAACCATTCAGGCCTCCAAGGACGTTTTTCCCATCCAAGCATCCATCCAGTGAAATTACACACTCAACACATAATAGAGTCTGTTCCTATCGTCTCAGCACAGAGAGACCCAGAACCCACATCTGCTCCAGAATACCCCAGACAATAAACAATTCACTCTTCATGTTCAAATCTCATTTTTCGGACAAAGTCttgacaataaaaaagaaataaattacGCCGCCTCTGAAGGGGCCGCCTTAGCCATCCTAAAGACGGAAGGAAAAGTTTTTCTCAGAGTTTTTTCGCGGCGAGCAGATTCCTCTGAGCTAGCCATTATCTCAGGGAGGAAGTTAATTAAAGTGGCCCAGTCTGAATCAATGGGGGAATTTGCTGCCGCGCGACGGACAGACCGACGGACTGACAGGAAGAGCGGAGTGACGGCCATGACACCACTTCAGAAGAGAAGATTAGCCCAGAGACAAAACTCTCGGCTCTGATCAGCCCTACAGTGTGGCTCTCCTCCTGGATTACTCCTCTCccacccctccctctcctcctttctttttctatctctccctcgctatccatccatccacgcCTCCCCCATCCTCCATCCCCGAAAGAACTTCAGGGGGCTTGTCTTCAAAGCTCGTCCCCTCCTTCCATCCCTGTAATTCCTCACATCATTACCAAGTTTCCAAAACTTAATTTTAGCAATTACACatgcaattaattaataaatgtgCTGTCATTACAGCCCCTTGTGTGATCTGAGCCCCATCAATGGGAGGTTGAAATAAAGTGGTCAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127383 lncRNA upstream 20732 10183194 ~ 10183408 (+) True G94405
XR_005640261.1 lncRNA upstream 44259 9985719 ~ 10159881 (+) False LOC120565490
XR_005640260.1 lncRNA upstream 44259 9985853 ~ 10159881 (+) False LOC120565490
XR_005640262.1 lncRNA upstream 44259 9988867 ~ 10159881 (+) False LOC120565490
XR_005640259.1 lncRNA upstream 44259 10074185 ~ 10159881 (+) True LOC120565490
TU127406 lncRNA downstream 41978 10339236 ~ 10405233 (+) True G94426
TU127407 lncRNA downstream 48939 10346197 ~ 10358788 (+) True G94427
TU127411 lncRNA downstream 112265 10409523 ~ 10413761 (+) False atp11b
TU127434 lncRNA downstream 210394 10507652 ~ 10509538 (+) True G94450
TU127515 lncRNA downstream 233438 10530696 ~ 10531381 (+) True G94515
XM_039811316.1 mRNA upstream 88818 10112982 ~ 10115322 (+) True sox2
XM_039811654.1 mRNA upstream 224398 9967354 ~ 9979742 (+) False fxr1
XM_039811525.1 mRNA downstream 66204 10363462 ~ 10414826 (+) True atp11b
XM_039812410.1 mRNA downstream 143300 10440558 ~ 10450982 (+) True kng1
XM_039812412.1 mRNA downstream 143300 10440558 ~ 10450982 (+) False kng1
XM_039812413.1 mRNA downstream 143326 10440584 ~ 10450982 (+) False kng1
XM_039812411.1 mRNA downstream 143327 10440585 ~ 10450982 (+) False kng1
TU127375 other upstream 44333 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 255910 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 300951 9902285 ~ 9903189 (+) True G94376
TU127196 other upstream 358159 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 358336 9844749 ~ 9845804 (+) False LOC120565620
TU127611 other downstream 619667 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 649718 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 951317 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 1131773 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2708318 13005576 ~ 13100445 (+) True raver2

Expression Profile