RNA id: TU130765


Basic Information

Item Value
RNA id TU130765
length 1643
lncRNA type read_through
GC content 0.43
exon number 2
gene id G96906
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21127063 ~ 21174307 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctttctttctttgtttctttctttctttctttctttctttctttctttctttctttctatttgtGCTGAAAAACATTTGACACTTCAGGGCTtcaaacacagcaaacacagtGACATCTGGTAGCTTGTAAAACTTACAGCAGCCCTTCGAGACGAGCCAAAGCAGTACTTAACACCTCTCTGATTTTAATAGTTTTAGTCTCATACGTGTTATTTTATATGAATCGCAATGTGATGTGATTGAATGATATTCATTAAATTAGTCTTACTTTTATAACATTATTACTTGGTATTAGATGGAAATGTTATCATACTATCGATTGTGACATTATGACATCGCCACATTTCTCAGTTATTCTCCTCTCGTCGTAGCATAGCAATATAGTTTAGCCGCTTCActtttttaaagctgcagacGGTCACCAGTCAAGTGGTATTCTTGTATTGACACAATCTCAGTTACACTTTATTAAAAACGGTGCTCCTCACAGGAGTGAAACGATATTCGGTATCACCCCCCCCCATCTCAAGGTTAGACATAAGAAATTATAAGCTTGATTTCTTAACgcaattttttatttgtctgggtttcactggaattgttgttTTGTGGTCTAAATGCTGTTTCCGAGTCTTGCAAAGCAAACTTTTGCAAAAGTATATGCAATACCCACAATTCTTATTTTTTGACAAAGAGGTCACATTTAAAAGGTATTAAAAATTGTTGGAAAATATCTGCTATTGGCCACTTAAGCCTAACAAAATTGGCACTAAACTACAATGAAGCATCGATCCAGGTCCCATATAGACTTTTGGAATAGTTGTCGTCCATTATGGCAATCGGAACCCTTTTCTTTACTCCATATGCAACATTTGTTATGCCCGCTGAGTTAAATGATTTGCTACAGTGTGACAGCATAGATGTAACTTGAGGAAAATCAGCAGAGGTTGGTTGGTTTTGGTATTGCAATATCCTTCCTGCCATTACTTCACCTCAATGATGAAAAGGTTAGTGCAAATTTCAACAGCGCTGGCTCAGGCAAAGATTGCATTAGTCCATTGACCAGACAGTTAATAGTCTTTCTGAATGTGTTGAATGGGGAAGGCTGGTGATACCACAACAGTGATACTGCTAAATGATCAGATGGTCTTAGTGTAGGTTAGGGCTTTTGTTGGAGTAGTAGTGAGAGACCGGTTTACTTCCCATGGCCACCGCTAGTACCACTAGTAGAGCTAGTGTTGACTATATCCTCATACTGTGGAGGTGGCTCCGTCTCTATTTGGACATCTGCATGGCCCACAGCCTCTTCATAAGATGGCGGCGGGTCTCCACCGCTTCCTCTTCCTGATGTGAGCTCTGAGCCTGGATAAGCTGGGCTGCTGTGGACGCTGAGTTCCGAGTCCCTCCCCCAATGGTCCATAGAGACCACTGACAGGACGTGGTCGTTATGAGAGTGTCCCAGGCTGGGGCTGCGCTGCGAGCGCTTGCGGGAGTGGCAGCGCCACACAGTAATGGCGACGGCGACAATGATGAGCACAACCAGCAGCAATGGCACGATCAAGTAGAGAGAGTGGACTCCTCCAACCACTGTCTCCAGCCCTCCAGATGGACTGCTCTCCCGCACATACTCCTCCCAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130756 lncRNA upstream 64759 21061672 ~ 21062304 (+) True G96898
TU130716 lncRNA upstream 117753 21005731 ~ 21009310 (+) True G96871
TU130585 lncRNA upstream 346145 20776558 ~ 20780918 (+) True G96782
TU130579 lncRNA upstream 377167 20749212 ~ 20749896 (+) True G96777
TU130574 lncRNA upstream 383288 20743067 ~ 20743775 (+) True G96775
TU130868 lncRNA downstream 136605 21310912 ~ 21314520 (+) True G96963
TU130923 lncRNA downstream 193811 21368118 ~ 21456800 (+) True G97009
TU130926 lncRNA downstream 198634 21372941 ~ 21373533 (+) True G97011
TU130941 lncRNA downstream 237056 21411363 ~ 21439395 (+) False LOC120565275
TU130979 lncRNA downstream 380646 21554953 ~ 21557731 (+) True lsm7
XM_039810280.1 mRNA upstream 51625 21073118 ~ 21075438 (+) True LOC120564993
XM_039811188.1 mRNA upstream 66224 21036277 ~ 21060839 (+) True ccdc50a
XM_039811189.1 mRNA upstream 66224 21036277 ~ 21060839 (+) False ccdc50a
XM_039812461.1 mRNA upstream 259075 20825520 ~ 20867988 (+) True usp13
XM_039812465.1 mRNA upstream 302488 20820248 ~ 20824575 (+) True ndufb5
XM_039811283.1 mRNA downstream 8496 21182803 ~ 21189074 (+) True tmem47
XM_039812059.1 mRNA downstream 28625 21202932 ~ 21215185 (+) True nexn
XM_039812060.1 mRNA downstream 28625 21202932 ~ 21215185 (+) False nexn
XM_039812061.1 mRNA downstream 28625 21202932 ~ 21215185 (+) False nexn
XM_039812062.1 mRNA downstream 31600 21205907 ~ 21215185 (+) False nexn
TU130185 other upstream 1595386 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 2341427 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 3254652 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 3255216 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 3258261 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 516590 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 1109339 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 1311204 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 1318650 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 1397752 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile