RNA id: TU131630


Basic Information

Item Value
RNA id TU131630
length 241
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G97538
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23324259 ~ 23324499 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAATTcagcttttgtttgtttattctaTCATTTCAGGGCACCACTCtggtattttcttttcattttggtcATCTCAATGCTGATACGTTAATGTTACCTAATTGTACTGATTTGAATTTGCTGCTTGATATGCCAATTAGGACCAAAATACACTCCTACAAAGCATGTGTAAAGAAGAGGAAATATGCCTCATAAACTATACTTTAACCCTTCAGTATTATGGCTTAAAACGCTGTGTGCC

Function

GO:

id name namespace
GO:0060089 molecular transducer activity molecular_function
GO:0004690 cyclic nucleotide-dependent protein kinase activity molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131629 lncRNA upstream 83 23323972 ~ 23324176 (+) True G97537
TU131627 lncRNA upstream 775 23322957 ~ 23323484 (+) True pole4
TU131625 lncRNA upstream 775 23323089 ~ 23323484 (+) False pole4
TU131626 lncRNA upstream 931 23322957 ~ 23323328 (+) False pole4
TU131568 lncRNA upstream 20568 23300844 ~ 23303691 (+) False LOC120565086
TU131650 lncRNA downstream 28341 23352840 ~ 23363480 (+) True G97554
TU131656 lncRNA downstream 35559 23360058 ~ 23362720 (+) True G97559
TU131669 lncRNA downstream 54251 23378750 ~ 23380374 (+) False LOC120565078
TU131670 lncRNA downstream 76530 23401029 ~ 23425798 (+) True G97572
TU131698 lncRNA downstream 135784 23460283 ~ 23461368 (+) True G97597
XM_039810185.1 mRNA upstream 1167 23321464 ~ 23323092 (+) False pole4
XM_039810442.1 mRNA upstream 20568 23300806 ~ 23303691 (+) True LOC120565086
XM_039811736.1 mRNA upstream 42423 23249131 ~ 23281836 (+) True spata6
XM_039810444.1 mRNA downstream 7279 23331778 ~ 23335697 (+) True ccl44
XM_039810429.1 mRNA downstream 54232 23378731 ~ 23380375 (+) True LOC120565078
XM_039811696.1 mRNA downstream 95445 23419944 ~ 23454783 (+) True si:ch1073-396h14.1
XM_039810994.1 mRNA downstream 261302 23585801 ~ 23588140 (+) True fam32a
XM_039810986.1 mRNA downstream 266953 23591452 ~ 23599922 (+) True hdgfl2
TU131620 other upstream 2350 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 748057 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 749111 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 749335 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 749587 22574591 ~ 22574672 (+) True LOC120566225
TU131697 other downstream 150283 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 1457419 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1527802 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1543518 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 2208326 25532825 ~ 25547089 (+) True G98194

Expression Profile