RNA id: TU135631


Basic Information

Item Value
RNA id TU135631
length 1304
RNA type TUCP
GC content 0.48
exon number 2
gene id G100671
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36695437 ~ 36698869 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTAAGCATCAAGGTGCAGAGAACAGCTCAGTGACAGCGAAAGCGTGCTGTCACAGCAGCTCTAAGGGATTATCTGTTTATAGAGGAACACTGAGGACACCGCCACAGATTAAAGCTCTTTTGGATATATTCATATCAGCTGGTGAATCACTGTCACCATAGTAACCATCCGTGCCATATACGGAGCCATCATCAAGGCCTTTCTTTGTTTCTCCTGGAGCTGAAAGTGCAGCAGTGGATGCTGACAGGAGTAGCAGAGGAAAGGTCTGGAGTGAAATCATATATGGAAATATGAGAGAAATATGAGGAAATATGAGGATGATAGTCCAcgagaaaacacaaaacagTGTTTCCAGATGTTGAGAGCTGGGGCGGTGTAGTGGGTGCAGCCGTGCAGGTGGAGCTGTGATGGACAGAGCAGTGATGGAGCCATGTGTCCATGTGGGGCTGCAGGCTGAGCCCAACACAGACCATAATATGTGCTCCCAGCAGCTTTGAACATGCAAACAGTGTAGAGCCGAGCACAGCCTTCCAGATGTTTCTGTCTAACACATCAGGACTCCTATTGTTGTTTCATACCTGgcagagagaggatggaggggtGTCCGACACCGACGCTGCCTGCACGACGCCTTATTCCCTCTgacttatataataataataatatagcctAAATGATACTAGCGTATATGTGATCCGATTAGTCCGATCGATTCTGGTTGTTGACGCTCCAGCTGATCGATGTTTTCACAGTGCGCAGAGCACCGCGGGCCCGTCGCATCCTCCAGCACAGGTTCCGACACAAACAGGATCGAGGGGATCAAGCGGCGGGGAGGAGCGTCGAACAGCGGTGGGCCGGGCCGTGCCGGGCCGGGCGGTAGACTGTGCAGCACCGAGGGTACACCGGTGGAACAGATCAGTTTGATCCAGCACTGGCTCCTCTCATCCTATCAGttccgctgctgctgctgctgctgctgctgctccagagGACCACAGTCAAGTCACAGATCcgccagcagcagcaagaaAAACACTTCCGCCCAGAATaaattcacaataaaagccttaTCCCAGGGGCCAAACTGCTTTTAAATTGATAGGCCGATGTGCACATTTGCTGCTATTCAGTGTCAAAATACTTGTCTTACACTCTTACTTAAACCATAGAAAGAAACTGTCAAATGCAGAATCAGCCTATCACATAGCCTACAACATACCATGGATAATAatttatgtagcctatatttAGCATAGCTATTTTGTGCTTGTAATTTGTGTGATTTATGTTATTAAATATACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko00350 Tyrosine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135628 lncRNA upstream 16607 36678498 ~ 36678830 (+) True G100668
TU135627 lncRNA upstream 17509 36674449 ~ 36677928 (+) True G100667
TU135517 lncRNA upstream 43547 36642906 ~ 36651890 (+) True LOC120565379
XR_005640229.1 lncRNA upstream 43547 36649341 ~ 36651890 (+) False LOC120565379
TU135506 lncRNA upstream 83698 36608898 ~ 36611739 (+) False sass6
TU135666 lncRNA downstream 55711 36754580 ~ 36754825 (+) True G100699
TU135687 lncRNA downstream 165111 36863980 ~ 36868994 (+) True G100714
TU135720 lncRNA downstream 236298 36935167 ~ 36974049 (+) True G100727
TU135709 lncRNA downstream 238296 36937165 ~ 36958330 (+) False prrc2c
TU135710 lncRNA downstream 238296 36937165 ~ 36958330 (+) False prrc2c
XM_039812354.1 mRNA upstream 83691 36596041 ~ 36611746 (+) True sass6
XM_039810548.1 mRNA upstream 100997 36563454 ~ 36594440 (+) False nfic
XM_039810546.1 mRNA upstream 100997 36563454 ~ 36594440 (+) False nfic
XM_039810550.1 mRNA upstream 100997 36563623 ~ 36594440 (+) True nfic
XM_039810549.1 mRNA upstream 100997 36563623 ~ 36594440 (+) False nfic
XM_039811841.1 mRNA downstream 5583 36704452 ~ 36712253 (+) True dohh
XM_039811842.1 mRNA downstream 5586 36704455 ~ 36712253 (+) False dohh
XM_039810322.1 mRNA downstream 14506 36713375 ~ 36720899 (+) True rsph4a
XM_039812100.1 mRNA downstream 26320 36725189 ~ 36741996 (+) True lonp1
XM_039812228.1 mRNA downstream 176778 36875647 ~ 36882393 (+) True plpp6
TU135471 other upstream 160898 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 160898 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 220242 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 466863 36227087 ~ 36228574 (+) False dsg2.1
TU134982 other upstream 2187885 34504643 ~ 34507552 (+) True G100174
XR_005640357.1 other downstream 433300 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 765045 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 2178342 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2761577 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 2862253 39561122 ~ 39565955 (+) False reps2

Expression Profile