RNA id: TU135666


Basic Information

Item Value
RNA id TU135666
length 246
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G100699
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36754580 ~ 36754825 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtttttttcaattgctaaacGATAGTGGGCACGACTGGAGTcccatgtgcaaaactcaaactacagtctgcactaccaccagtcacctgagctaaacagttcacatcacctgcaaaactcattcaaagcaacacaactcttgaCACgtgtctcaaaacaggctcagtgcagccaaacactcagaacaatcctcactgagataacacacactgtcactcagaacacactgagagtaaaaacaccaT

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes
ko04610 Complement and coagulation cascades
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135628 lncRNA upstream 75750 36678498 ~ 36678830 (+) True G100668
TU135627 lncRNA upstream 76652 36674449 ~ 36677928 (+) True G100667
TU135517 lncRNA upstream 102690 36642906 ~ 36651890 (+) True LOC120565379
XR_005640229.1 lncRNA upstream 102690 36649341 ~ 36651890 (+) False LOC120565379
TU135506 lncRNA upstream 142841 36608898 ~ 36611739 (+) False sass6
TU135687 lncRNA downstream 109155 36863980 ~ 36868994 (+) True G100714
TU135720 lncRNA downstream 180342 36935167 ~ 36974049 (+) True G100727
TU135709 lncRNA downstream 182340 36937165 ~ 36958330 (+) False prrc2c
TU135710 lncRNA downstream 182340 36937165 ~ 36958330 (+) False prrc2c
TU135711 lncRNA downstream 182340 36937165 ~ 36958330 (+) False prrc2c
XM_039812100.1 mRNA upstream 12584 36725189 ~ 36741996 (+) True lonp1
XM_039810322.1 mRNA upstream 33681 36713375 ~ 36720899 (+) True rsph4a
XM_039811841.1 mRNA upstream 42327 36704452 ~ 36712253 (+) True dohh
XM_039811842.1 mRNA upstream 42327 36704455 ~ 36712253 (+) False dohh
XM_039812354.1 mRNA upstream 142834 36596041 ~ 36611746 (+) True sass6
XM_039812228.1 mRNA downstream 120822 36875647 ~ 36882393 (+) True plpp6
XM_039812230.1 mRNA downstream 134593 36889418 ~ 36917143 (+) True LOC120566029
XM_039810357.1 mRNA downstream 167668 36922493 ~ 36931245 (+) True LOC120565044
XM_039810358.1 mRNA downstream 167671 36922496 ~ 36931245 (+) False LOC120565044
XM_039810351.1 mRNA downstream 177830 36932655 ~ 36958360 (+) True prrc2c
TU135631 other upstream 55711 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 220041 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 220041 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 279385 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 526006 36227087 ~ 36228574 (+) False dsg2.1
XR_005640357.1 other downstream 377344 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 709089 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 2122386 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2705621 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 2806297 39561122 ~ 39565955 (+) False reps2

Expression Profile