RNA id: XM_039810253.1


Basic Information

Item Value
RNA id XM_039810253.1
length 2512
RNA type mRNA
GC content 0.47
exon number 13
gene id ghrhrb
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 6672071 ~ 6723277 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCCCGCGCGTAATGCGGACCTTTTCCTGCACCGGACACCGGAGAGACACCCGACAACATTCATATCGGCAAACGGCCAACCAGCGGCTCAGTTCAtgtttgacatttatttaaaaaatttaaaaaaagggaagTGATTTCTTATTGTCGAAGTCTAATAACATCCTTGGAcgtattttgacttttttttttttgcgcgtAGTTTTCAAAGTGAACAAGAATGTTATTGCACAGTAGTCTCATCTCTGGAAGCTCGCGGTTGAAATGGATGGCCACGTTACTTCACACGGGTCTGTTCCTGCAGCTGGCGCTCTGGGAGACGACAGAGGCCATCCACCCAGACTGTGCCCTGGTGGTTCAGCACATGAAGGCTCAAGAACAATGTAACCAGATCCACAAACAGGAGGAGAACAACCACTCTACCAGGACAGGGTGTCTGACAGAGTGGGATGATATCCGTTGCTGGTATCGTGCAGATGTGGGACAGGTGGTCAACGTCTCGTGTGCTGATGCTTCCCAGCTGTTTGCTAATAACCAAGGTTACGTCTACAGGAACTGCACTGAGCATGGATGGTCCGAGCCCTACCCCTCCTATGACGAGGCCTGCGAGTTCACAGAGTACGAAGCGACAGATCCAGAGacAACATACTTCTCCAACTTCAAACAGGTGTACACGGCGGGCTACGCTACCTCCCTCATCTCTCTTATATCAGCGATTTTTGTCTTCACCGTGTTCAGGAAGTTTCACTGCACCAGGAACTACATCCACATCAACCTGTTCTTCTCCTTCATCCTGAGAGCAAGCGCCGTCTTCATTAAAGATGGCGTTCTTTTTTCGGATGTAAACCTGGACCACTGCTTCATGTCTACTACATCCTGTAAATCCGCCGTGGCCTTCTTCCAGTTCAGTATCCTGGCCAATTACTTCTGGCTGCTGGTGGAGGGCATGTACCTGCAGACGCTGCTTGCTCTCACCTTTGTATTCCAGAAGAAATACTTCTGGTGGTACATACTCATCGGCTGGGGTGTCCCAACAACAATCATAACGGCGTGGATCCTCACTCGAAACTTCTATGATAACAAGGGGTGCTGGGATGACACAGATGTGGCCTTCATCTGGTGGATCATAAAAGCTCCAATAACTGCATCACTACTGGTGaacttcatcatcttcatcaacGTGATCCGCATCCTGGTCCAGAAGCTGACATCTCCTGGTGTCGGTGGCAACGACACCAGTCACTTCAAGAGGCTGGCCAAATCCACTCTGCTTCTCATCCCTCTGTTTGGGATGCACTACATGGTGTTTGCTTTCCTGCCAGAAAACACAGGAGCAGAGGCCCGACTCTTCATAGAGCTCGGTCTGGGATCCTTTCAgGGATTTGTTGTGGCCCTGCTTTACTGTTTCCTGAATGGCGAGGCAGAACTGAAGAAGAGGTTTTGGAAGTGGCAGACTCAGAGTTACCTGAGGTACAGTAAACGACGGCGTACGTTGTTCACTGAAAGCAGCACGGTCACTCAGATCTCCGTCTTGGACAAATCCAGCCCCAAAGATCAGCCGCCCTCAGAGACACGCGCCCTCACAGCCAGCAACGTCTCCACTGTCTGAGGAGCATTCCCTAACGTTCATGGCCTGTGTTACACCCTCTCTATATTTGGACGAGGTCCTGAGTAGGTGACTAAACCTCAGAGCCTGATTGTTGAGTGTTTAAAGTTCCTCTTAACTTGGTTGCAGAGTCCCACATGGACTGCCAAACTTAGGTCTTTAACTCCTTTAACCTTCACATCATACTCACAACCACCGAATCAGTTCTCCTCTCTTACAAAAGTGCTGATATCAATTACACCGTGAATATGGCTTGAAAACATTGccctttaagtttttatttagatctatgaaaataaaaaccaaCCATATTATACTAAAAGTAACTATGATTAGTTTCTGCTGTCACAGCTCCTCTGAGTCCTTCTAATTCAAGGTTCAACTGTTCTGCttcgtgttaaaatgtgtttatgttgtttttcctCATATTATATTTTCACATGCTAAGCCATTCATAGGGCCAAACTAAAATAGATTGTCCTCTGTTGCGGTCTCAAGCAGCCAGAAGACGGACAGTGGTCAGAAAGGGTTAGGAGCAGGACAGGACATACTGTAAGGAGGAAGGCTGGATGgctcaaacaaacaggactttcactcattGGCGTTTGTGTCCCGTGTGAAATCAAAAGTCAGCTGCCATTTTGAAATTAACCGTGTTTAACAGCCGTTATAAGTGACGCAATGACGTCCGTGACGTCACGTTACGtcctcattttagtagttttacatAATTTAAAAGCCCTAAacccttaaccttaaccctagtTTTTATCAAGGACGTTTCATTtgcgggattgttcaggtgccgctggaaattgtCGAAATGTCGCTtattttcagccggatgtccgtctcctttctttgtgtttccttctaaactccggtggatttctgaggactatggt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126449 lncRNA upstream 82418 6589203 ~ 6589653 (+) True G93713
TU126433 lncRNA upstream 273074 6390156 ~ 6398997 (+) True G93700
TU126357 lncRNA upstream 429913 6241195 ~ 6242158 (+) True G93644
TU126350 lncRNA upstream 456336 6215068 ~ 6215735 (+) True G93640
TU126316 lncRNA upstream 620551 6035369 ~ 6051520 (+) False G93613
TU126505 lncRNA downstream 113314 6836591 ~ 6836818 (+) True G93758
TU126542 lncRNA downstream 152874 6876151 ~ 6876493 (+) True G93790
TU126543 lncRNA downstream 156526 6879803 ~ 6880081 (+) True G93791
TU126583 lncRNA downstream 251030 6974307 ~ 6975368 (+) True G93820
TU126587 lncRNA downstream 252367 6975644 ~ 6977546 (+) True G93823
XM_039811997.1 mRNA upstream 30951 6627642 ~ 6641120 (+) True cyldl
XM_039812355.1 mRNA upstream 290473 6354892 ~ 6381598 (+) True rhpn1
XM_039811775.1 mRNA upstream 326990 6335751 ~ 6345081 (+) True LOC120565762
XM_039811499.1 mRNA upstream 381952 6262220 ~ 6290119 (+) True tut4
XM_039811753.1 mRNA upstream 600824 6067683 ~ 6071247 (+) True LOC120565748
XM_039811272.1 mRNA downstream 242270 6965547 ~ 6971300 (+) True si:ch211-191a24.4
XM_039811274.1 mRNA downstream 283893 7007170 ~ 7067934 (+) True si:ch211-191a24.3
XM_039811275.1 mRNA downstream 384872 7108149 ~ 7127272 (+) True igfbp3
XM_039811515.1 mRNA downstream 540270 7263547 ~ 7285759 (+) True LOC120565613
XM_039811822.1 mRNA downstream 630571 7353848 ~ 7379344 (+) True LOC120565797
TU126420 other upstream 303717 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 458054 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 631952 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 1958886 4711561 ~ 4713185 (+) False trmt1l
XR_005640230.1 other upstream 2378181 4290341 ~ 4293890 (+) False LOC120565391
TU126750 other downstream 626533 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 1175395 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 1514093 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 1514093 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 2423885 9147162 ~ 9159695 (+) True G94199

Expression Profile