RNA id: XM_039811753.1


Basic Information

Item Value
RNA id XM_039811753.1
length 2135
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120565748
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 6067683 ~ 6071247 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTATGGTGCCGCTCCCACAGCAGCATCGTACATAGTGTGAAGAGCAGAAACCAGGAACTCATATTCAGCAAACTACAGGTAACAGTGGGATGATGAGTGCTGCTCAGACCCAAGCAACACTGGAGTCCAAACTGGAGGCCCTGCAGTGCCACTTCACTTGGAATCTGGACCAAAGCACGACTAAACTTTTCCGTCTCAGGGACCAGCTGAAGGACATTGGCACAGAGGAGGGATACAGCTGGCTGGGTCACATTTACAACCTGCAGGGGTTCATTCACTACCAGCTGGGGTTCACCGATGATGCCCTGCGTTTCTTCAGCAGGGCAGCAGAGGCCTTCCGCCAGATGAGAAACACTGTCTCAGACGAGGGCCCCTGGTTGGTGGTGAACCACAGGAACCTGGCGTGGCTGCACCACCATCTGGGAGACCGAGCAGAGAGTCAGGCTTACCTGTCAAAGGCCGACGACTTGACAAATGAATACCCATCTCCATCCCAGGACCAGCTCCATCCAGAGATCTACGCTGAAAAAGCCTGGACCCTGATGAAGTTTGGCGCAGAAGAAAAGCTTCTGGCTGCAGATTACTTCCAGAGAGCCATCAGGATGCAGCCGGACACGGTGGAGTGGCACAGCAGCCACGTCATAGGGTTAGTGAATGCTTTTAAGCATAGCAACAAAAAGCTGGGGGCTGACATcttggagaaaatgaaaatcgcCAAGGAACACGATCCAGAGAACTTGTATCTCGCTGCTCTGTACCTTGAGGCATGTGCTACGAAAGGAAAGCAAATTGAAAGTGAAGCGCGTGAGTTGGCCAGCAGGGTTTTAAGGAAGCCCATTAGCAGCTACAGTGGTATCAAACCATTACTAAGGCTGTACACAATGTATGTATCTCCTGATGAGGCCATTGATTTGGCTGAGGAGGTTCTGGAAAGACATCCAGATGAACGATATCTGAAGAGATGTGCTGCAGTCTGCTACAAAAAGAGGATCTTTTTACACCGGGACAATCCCCTGGAGCACAGCCTGATCGACAGAGCTATCAGTCTCTATGAGGAAGTGATTCCTCTTTACCCTCGTTCTTCACTTAAGAGAAAAATATCTCTTGCAAACATATACGCAGAGTCGAAACACCGAGCTAAAGCTGACCAGATATACGAGGAATTGCTGGAGAGTGATCTGGATGCTGAAGGGGCACAGATGCTTTACAACTACTATGCAAAATATGTACACTTCATCCGAAAAGAGAGCTACAAGTCGATAGAATATCACATGATGGCAGCGGCGGTACCGCAACAATCATACTATCGTAAAAACAGCATCAGAACTCTAGAGAGGATcagagaaagaaacagaaacCGAATGTGTGGAGAAATAGATGAGTTTCTGAATAACATGCAAGACTAATGCAGCTTTACCAATGCATGGTACGGCTCGACTCGCtcgttttttggttttccatttgcAAAAGTTTTAGATAGTAGCCTTCCTGGTACTTATTTGGTACCACCTTGgttgaggttccaagcgagctgagccaATACTAGAAGAGTTGGAGTTTAAACACTGCAGACCattgattggtcagagagaatcgtcactagcGCAACACGGTATATCCTGCACAAACCCACCTTTTCCAAGCTATCGTCAATAGCGACCGCAATTGTTTGATTCACCTCGCTCAGCTTTTACAAAGTGGCAGCCTAAAACATTATGCTGTACAATACACTACTAGGATACCCATGCCTCATTTTGATGCCACTTAAACGCCTGTGCTGCTCTATAGACCAGTGCTCTGAAATGGACGTTACAAGAAACAGAAGCTGCATCTGtaactagttaacactacatgtggcagcaggtaacattagcctactgttagctagtagctagctaaaacactattaaaatgctgacagctcaACGGTCTAACATGCTGTTTTTCAATGAAAAGAATGCAAAGGGTTCAACAgactgcagctaaagacacagaggagactagCTGCACTGTGGCCACTGCTGCtgacaacacagacgggacttAATGGTGCGTTCAATTGCAAATCTTAAGCTCattgtgcattcaaagttaCTTTTTCTATCTAGTGGTTCttcttttcatcatttcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126316 lncRNA upstream 16163 6035369 ~ 6051520 (+) False G93613
TU126314 lncRNA upstream 19961 6035369 ~ 6047722 (+) False G93613
TU126313 lncRNA upstream 28835 6035369 ~ 6038848 (+) True G93613
TU126307 lncRNA upstream 102624 5964812 ~ 5965059 (+) True G93609
TU126234 lncRNA upstream 406878 5596770 ~ 5660805 (+) True G93541
TU126350 lncRNA downstream 143821 6215068 ~ 6215735 (+) True G93640
TU126357 lncRNA downstream 169948 6241195 ~ 6242158 (+) True G93644
TU126433 lncRNA downstream 318909 6390156 ~ 6398997 (+) True G93700
TU126449 lncRNA downstream 517956 6589203 ~ 6589653 (+) True G93713
TU126505 lncRNA downstream 765344 6836591 ~ 6836818 (+) True G93758
XM_039811550.1 mRNA upstream 38490 6002811 ~ 6029193 (+) True LOC120565642
XM_039812505.1 mRNA upstream 580798 5329840 ~ 5486885 (+) False mast2
XM_039811499.1 mRNA downstream 190973 6262220 ~ 6290119 (+) True tut4
XM_039811775.1 mRNA downstream 264504 6335751 ~ 6345081 (+) True LOC120565762
XM_039812355.1 mRNA downstream 283645 6354892 ~ 6381598 (+) True rhpn1
XM_039811997.1 mRNA downstream 556395 6627642 ~ 6641120 (+) True cyldl
XM_039810252.1 mRNA downstream 600824 6672071 ~ 6723277 (+) True ghrhrb
TU126315 other upstream 27564 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 1354498 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 1770273 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 1773793 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 1849857 4196824 ~ 4217826 (+) True G93150
TU126347 other downstream 130838 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 283650 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 1278563 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 1827425 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 2166123 8237370 ~ 8245821 (+) False G94073

Expression Profile