RNA id: TU126313


Basic Information

Item Value
RNA id TU126313
length 3460
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G93613
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 6035369 ~ 6051520 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TccgtaaaaaaacatctttattaATTTCCATGATAAAAGCTAAAGGAACTCATACACGTCAAACTGCAGTATGTCCATGAATCATCGTCACATACACGGTGTACCCTTTTAGTATTTCCCAAGTTACCTCACAGCATTACATCAAATCAACCGTACTGCTGAGGAGACGGCGATTTGGTTTTACCCAATcaattcaacaaagacaagcaCACGTACCACTGAAAACTAAGAATGAAATGAAAGGACaaatatggaggaaaaaaaagttgctTAAAAGTGGGCAGATTGCACTTCTTCAAACTGAAATTTCCAGGACACAAATGGACATCGATTCAGTCAAGACACGGGCTGTAATACTGCCGAATAAGTTGTCCTTCTGACTGACTGCAGATAGGAAATATCTGGTTTTctgaacacacaaaaatacacatataaaaaagaaagaaaaaaaactcaaaccacTCTGCAAATACTGATTGATGCATTGAAACGTGATTCACACACTCAGTTGTTTAGTCGGTACAGTGTTACGTCAGCCGAAAGCCAGAGTGACGTAGGAGACGATGAAGCGTCTCCTCGCAGAAAAACACTCTGCAATCCCCCCCAATTAGCATATATAAGTGGTATATTACCAATTTATAAATATCTATACCACACTAGAATGTAGCTATGAGCAGAAATAAGTGTGTCAGTATGGGTTTGACAATGTCAATAACTGTATATTCTCAATGAAGCATTGGATATCTCATTTTTAATGGAAGCGAAAATAGCAAATATATCGTGACACTGCAGGTACAGTGTCAGTGGTAAACAAGGTTCAAGACCCTAGGGTGGACGTTTCCCTCGTTCCACAATCTGAAGAAGAGCGCTCAACTCTTGTGGCTCAAACTGTCGTAGCCTACAAACatttgggttacactttacttgaaggcatctacataagagtgacatgacacggtcatggacgtgtcataaacattataaacgagtcataaacgtttaggacataacacttcttttagtgtcatttggtttttgtcatgacaagttatggttagagttagggttcatgtgtcatgtcactgttatggagataccttcaagtaaagtgttaaacatttctgtaacattttaaacagaatattagcctggttgacacaagacccttctcagctgtaactgagagtgggtctggggaagcttcattcacagcccatttccaaaggggcgtcaccaacggacgccgctcaaatgcctctgggtacGATTGggtagtccttcaaccaatcagaccaatgttccgggtgacgtagcagcgggttgctggccgtcatgttgaacggaaacaaaaaaaaaaaactgctcgccattgctgcgctatcgtcatcgtgtaaagcgcctcaacggttgtgattggtgcctcgatttggaaaaattgaaaatgggcttgaatgggctcttggccagacagAGCAAATCTCAAGTTTGCCGGAAGTaaatcagggttttcccaggctaccaGAATATATTATACCACCTTACATTTTTGACTCTTGTCAAATGTTTCCACTTTTATTTTGTGGTGTGGTTACGTCTGGGTATCGGTGCTGATGCCGGACTTTCACcactaaacaccaaaacaatacTTTTCCAGCTAGCAACTTTAATACAAACATTTCTAAATTTAACCAAGCAGACCAATTACTGTTTTGTGTATGCAGTTTGTGTAGCTGGGAAAGAACTTTAATTAGAATGAAAATGAActgattttttaaatttaattcagGAGCCAGCTGATCAAATGTATAGAATACATAATAGGGATGTTTCTTCTCGTTTTGTTtgcacttaacccttgtgttgtcctcgggtccagTTTTATTGTATCAGAAATATGAGTTTCTTTCATCCAACTTGCCCAAACATAACTTGGATGCATATGTGCGTTGTATGGAAGCCATACAACGTTCTTCGCAGGTAACATTAATaattacttccattgaattttgggtgttttatttaattttatagcatttcaaAAACTAATTGTAAAaagggttttaaaacagtatacGGACTAAACATATACTAGTATGTGATTGTCTACTCAACATCCTCGGActttaactattagtcaaaataatttataatttcagctttttttttaactaaaaaactaggtataatgtcatttaaatttggTTTGTTTGATGAATAAAacaagtgttgaaaaaagtgacaaggtTTAAAACTGCATCAAAGGCAtactaaaacgttggaaaaagcacacaaaaaaaatatcctTTTCAGTTTAGAcccggaaggacaacaagttaatggtgacgggaagacaacaggagggttaaagcgCCGCTGTAAGAGCAGGCGTACTGTATGAGGGTTTCTAATAGAAGAGGATGTTGAATCGGGGAATATTTTCTCatgtttctctctttcagcCACCATCGAGTTTCCCCTCATGAAAGCTGATCCGAGGCAACTGATCcaagcagtcaacaatagtcaaAACCCACAGGGCTGTTATCAACTCAATATCTAAAACGCTGAAAAATATGCAAACCCTTTTAATTTttatcaaaaaaatatattaggCATGTATAtacattattatttcattatctGTAAACGTTaggctcttaaaaaaaaaaacatgcaccgATCTTGATAAAAGTGGATTTCTAAAATGATAAAATGCAAACTATGAAACTCCTTTAGGATTGATAGatgtaaaataaatagataagtTAAAACATAAGTACAAAATGAACAAAGCACtcagttaaaaaacaacaaacgaAAGGAAGAAAACGGGCTAAATTCTGGCGAGTGTGCCTTTGTGTCATTTGCACCGTAGAATTGATATTCACCAAACCGCGGATCGGCCCACAGTTGTCAcggaaactgaaaaaaaaaaaagctgttgaCAGTCATATACTGTTTCGGTCGTTCAGTCACGTTCAaccaaaacagtttttttagCATCGTCGTTCCTCCTCCAGCTGTTGGACGGATATTGTAGTGCAGTTTGTAGTGTTAATGCCCCCTTTCATTTCAAtataagaaagaaacaaaaatgggGACTCCATTTCCCAGGTATCCTCTGGTACACAAGTTCAACACTTAGGAAAAAAGTCAGTTTTGTAGTTGTGGGTCCCCCGGCTGGATGATCAGTGGTTGTTGGTGGAGAGAGAAGAGTTAAGGCCTGGGCTGgtcgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctacatctGCTCCACCGGTGCTCCCTCTTCTTTGGGTGGAGGCTCTAAGTGAATGGGAGTAACGCCGGCGGGTTTCTTCACACTGCCCGTGGgacaaagagagggacagacaggaggacagagagtggacaggcagtggtggaaagaTAAGAAAAGGGAAAAATTGTGACATATTTGTGCTGGGGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126307 lncRNA upstream 70310 5964812 ~ 5965059 (+) True G93609
TU126234 lncRNA upstream 374564 5596770 ~ 5660805 (+) True G93541
TU126089 lncRNA upstream 542912 5488294 ~ 5492457 (+) True G93437
TU126101 lncRNA upstream 624011 5400131 ~ 5411358 (+) True G93441
TU126099 lncRNA upstream 628127 5353344 ~ 5407242 (+) True G93439
TU126350 lncRNA downstream 176220 6215068 ~ 6215735 (+) True G93640
TU126357 lncRNA downstream 202347 6241195 ~ 6242158 (+) True G93644
TU126433 lncRNA downstream 351308 6390156 ~ 6398997 (+) True G93700
TU126449 lncRNA downstream 550355 6589203 ~ 6589653 (+) True G93713
TU126505 lncRNA downstream 797743 6836591 ~ 6836818 (+) True G93758
XM_039811550.1 mRNA upstream 6176 6002811 ~ 6029193 (+) True LOC120565642
XM_039812505.1 mRNA upstream 548484 5329840 ~ 5486885 (+) False mast2
XM_039811753.1 mRNA downstream 28835 6067683 ~ 6071247 (+) True LOC120565748
XM_039811499.1 mRNA downstream 223372 6262220 ~ 6290119 (+) True tut4
XM_039811775.1 mRNA downstream 296903 6335751 ~ 6345081 (+) True LOC120565762
XM_039812355.1 mRNA downstream 316044 6354892 ~ 6381598 (+) True rhpn1
XM_039811997.1 mRNA downstream 588794 6627642 ~ 6641120 (+) True cyldl
TU125908 other upstream 1322184 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 1737959 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 1741479 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 1817543 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 2428544 3600978 ~ 3606825 (+) True G92848
TU126347 other downstream 163237 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 316049 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 1310962 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 1859824 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 2198522 8237370 ~ 8245821 (+) False G94073

Expression Profile