RNA id: TU126099


Basic Information

Item Value
RNA id TU126099
length 546
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G93439
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 5353344 ~ 5407242 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccacacacacagacacacacacacacacacagacagacagacagacactcacacacatacacacacacagacactctcacacacatacacacaaacagacacacacatacacacacacagacactctcacacacatacacacaaacagacactctcacacacacaaacagacacacacatacacaaacagacagacacatacacacacatacacacagacacaaacacacacacatacacaaacagacagacacacacattcacacagacacaaacagacacacagactgactgacagacacacacaaacacacacacccacacacagattgacagacccacacacagacacacacagactgacagacccacacacagacacacacacagagacagacccacacacagacacacacacacacacaaatggacacacacacacatacacacaaacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126108 lncRNA upstream 25111 5327985 ~ 5328233 (+) True G93448
TU126067 lncRNA upstream 252610 5062327 ~ 5100734 (+) True G93432
TU126066 lncRNA upstream 253028 5058606 ~ 5100316 (+) True G93431
TU125935 lncRNA upstream 409397 4943645 ~ 4943947 (+) True G93350
TU125937 lncRNA upstream 409397 4943645 ~ 4943947 (+) False G93350
TU126089 lncRNA downstream 81052 5488294 ~ 5492457 (+) True G93437
TU126234 lncRNA downstream 189528 5596770 ~ 5660805 (+) True G93541
TU126307 lncRNA downstream 557570 5964812 ~ 5965059 (+) True G93609
TU126313 lncRNA downstream 628127 6035369 ~ 6038848 (+) True G93613
TU126314 lncRNA downstream 628127 6035369 ~ 6047722 (+) False G93613
XM_039812491.1 mRNA upstream 151469 5126498 ~ 5201875 (+) False LOC120566192
XM_039812488.1 mRNA upstream 151470 5126498 ~ 5201874 (+) True LOC120566192
XM_039812493.1 mRNA upstream 151470 5126498 ~ 5201874 (+) False LOC120566192
XM_039812490.1 mRNA upstream 151470 5126498 ~ 5201874 (+) False LOC120566192
XM_039812489.1 mRNA upstream 151470 5126498 ~ 5201874 (+) False LOC120566192
XM_039811550.1 mRNA downstream 595569 6002811 ~ 6029193 (+) True LOC120565642
XM_039811753.1 mRNA downstream 660441 6067683 ~ 6071247 (+) True LOC120565748
XM_039811499.1 mRNA downstream 854978 6262220 ~ 6290119 (+) True tut4
XM_039811775.1 mRNA downstream 928509 6335751 ~ 6345081 (+) True LOC120565762
XM_039812355.1 mRNA downstream 947650 6354892 ~ 6381598 (+) True rhpn1
TU125908 other upstream 640159 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 1055934 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 1059454 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 1135518 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1746519 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 628127 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 794843 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 947655 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 1942568 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 2491430 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile