RNA id: XM_039810533.1


Basic Information

Item Value
RNA id XM_039810533.1
length 3565
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC120565120
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16174908 ~ 16204745 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGACTCTTGCGTCATCATTCCGCGCCACGTGCAATGCAAATGCCAAATGTGGAGGACATCAATGAAGCATGGGAAACCTTGgagctttatttctttttctcgCGCTTCTAACCTTGGGTCATATTTGGGGGGTTGCAGGTCACTCTCTGCCCGCCTGCCACGAGCTGCTGCAGTTCAGGTGCAGCGATGGCTTGTGCATCCCGAGACCGAGCGTGTGTGACGGACACACAGACTGTGAAGACGGATCAGATGAACACCACTGTGGTCACCTGTGGTGTAAAAAAGATGAATTTGCCTGCCGCAGCAGACGGTGCATATCTCCACGTTTCCTTTGCAATGGCGTGGACGACTGTGGGGACGGGAGTGACGAGGCCTTCTGCCAGAATTGCACCACCCCTGGCTTCTTCTCCTGCGAGCCGTCTGACACCTGTCTGCACAGAGACAAGCTGTGTGATGGGCGAACTGACTGCAAAAACCGGCGGGACGAGTCTTGGGAGTTGTGTGGTTCGTCTCGGCTAAGCCCGCAGACGTCTCCCAAGTGTACGGCGTCTGAGTTTCAGTGTGGAGACGGGCATTGCATCCGCCAGACATGGAGGTGTGACAACTCTCCAGACTGCTCTGATGGCAGCGACGAGGACAACTGTGATCAGAACGAGTGTGAGGTCAATAATGGAGGCTGCTCTCATCTGTGTGTGGACCAGAAGATGGGATTCCACTGCGACTGCCCCGGCAACATGAGGCTGGTCCGGGACAGCCACTGTGAGGAGGTCAACACGTGCCTGGAGAGCGATGTGTGCGATCAGCTGTGTGTTCACATGAACGACAGCCTCGCCTGCGACTGCTACGAGGACTACCAGATGAATCCAACAACCAGAGAGTGCAAGGCCACAGGGAATGAGGCTCAGCTGGTTTTCACCTCTTCTAAAGGAATGTGTTGGAGAAGCATCACTGGCACCGAGTACAGGGAACCGGCTGCACATttaccaggaccaggaccagtgGCGGCCTTGGCCTCTAACCGAACACTGTACTGGGCCCAGCAAGGAAAAGGCTCCGTATACAGGATCTCCATGGATGGAAAGCTGCATGATTCAGTGTTGGTGCTGAAAGTTCAAGGTTCAGTGTCAGGCCTGGCTGTGGACTGGGTCCACCATCTCCTCTACTGGACCAGTATGGAGAGCGGTTCTGTTAACGTCGGCCTGCTAGACGGTTCGGCTCAGCGTCGGCTTATCACCGGACTGGATAAACCTTCTGCAGTGGCTCTGGATCCTCTACGAGGGCTGCTCTTCTGGGCTCAGTCTGGCCGCCCCTCAAAGATTGAGAGAGCTAGCTTGGACGGTCGGGACAGGACGGCTCTGGTCACTTCCTTAATACTCTACCCTGTTGCGCTCTCTCTGGATATGCCTCGTCAGCTGCTGTACTGGGTTGACCAGGGAATGAGAAGCATCTCCAGAGTAAATCTAGACGGCCGTGACCGTAAGACGGTGGTAGAGTCGAACGGATATTTGGATCGGCCTTTTGGACTGGCTGtgtttgagGGTTTTGTATATTGGAGTGAAGAAGTGACACGCTCCATCTGCAGAGCCAACAAACACAACGGTGGTGACCACCAAGTGCTGCTGTCAAACGTCATCTCACCGGGTGGTGTGGTCATCCTCCAACCTGCTCTCCAACCAAACGGTCCATCTGTATGTGGACATACTGGGACACTGTGCCATCACGAGTGTACTGTCGACCTGCTGTCTGAGAGTCCAGAGTTCAGCTGCACTCCTCCAGAAAAAGGACAAAACACATCTGAAGAAATTCCTGCCATTTCTCGCACCGTTCCTGCATCAACTTTATCTGACCCGACGTCTGCTGGAATCCTCTCTGTTATCATGTTTCTTAGTGTGCTGCTGGTGGGAATGGCTCTGTGGTGGTGGCGAGAGGAGTTCAGACCATCCAGGTCTCTCACTGAGCAGAGCATCTCCCTTAAAGAGTCCCAGGACCCGCTCATCATCCAGGGGCCGCACATGGCTCCAAACACATGCCTTGTGAAGGCAAGAGAagtttgtgcacacacacaaaaaaagcagaTACCAGGCGCCTTCATTCACCTTCAGAGAGGAGATGCCATTCATTCAGCTGCACGAAACTCTGCTTAAGCTGGACTTGGACGGTGAATGACGAcggtgcaacacagatggcCAGCTGCCTGGTGCTGTCTCAACCCCCGCAGTGACCTCAGGGCTGACAGACAACAACAAACCTGTCGTCTTGTCCCAACTCCGTGTGCAGTTTAAGAGAAATGACCCGGTGGTAAATATCAGAGTTTAGATGAGGAACAGACTTTGGAACAGTAACTTCTGTTTTGAAGAATTGTTACTTTCAGCTCTTGTGGTTTCAGAATTCATCTTTGTTAACGATGATGATGTTTGCTTATATTCTATTGAACAAACCTACATCAAATTTTTTGTGCTTTGAATATCAGCAAGGATGAACTTGTATATTTTGCCTTATTTTTCAAACCCTTTATGTGAAGCATTTTCCTCTGCGATTTACCAGTTATGTTACAACTGTAGATCAGTGGAAATGTGATCTGTTTAGATTATATCTGAAACAATTAGTTCATTAATCGCTTAGTCGTTCGAAAGAAAATGAATGAgtgactattttgataattgattataGATTATTTAAGTCAAAGCATTGAACATTTGCTGGTTCCATCTTCGgcatttgttttctctttgtgacagtaaactaaatatatatttgggGTTCAGACTGTTGATCAGACAACATCAATCAATTGGgagacatttttcactatttttggAGATTTTACAGATCAATTGTTTAATAgcaaataattgttagttgccgTTCTACtgtagatttttattttattgttgcaCTTTCTCACTCAACGTTTATTTCATCTTATGCAATCAAAACTATACTTTTGCAATATTATGGAGGGTTTTTACTTTACAACATCCAACagaaatattatgaataatgtgacaaaaaaaactgacacaaatcaacggggcgacctctagctcacccagaaaagaagaaaaaaaatcaagtcaACTATAAGGTACAGATGTCCTTCCTGTTAACACGCACACTTTTTACTGAATACTAAACTACTGTTTTTTGGCTTCTTCAGTAAGAGGAAATGCTGCAAAAATCTTTgaatgttggaaaaaatgatCTGGTGCTGCAATGGGGAggagtgtgttttgttttgtgaaatgtCTCCTGGAGGTTTGGTTTTGTGCACAGGGCCTGGTTAGTGTTGTATGGAGTGTTTGGTTAATTGACCTGCTTTGTTCTTTTGTGTTATTTGAGTCTCAAAGAAAATATAAGTCTGTTGGACTGATTATAAATCCATCGGCAGCAATTGAGCGATCATTCTGTAAGTGTGCCCCATCTGCGgagttgtgtgtgttggtatttatttttaaggatgtgttttatttatttttgggcaGCATTACAGCCATTTGCACCATggataaaaactgtaaaatgctGTATATGAATCAAATAAAGTAATTTTAGTTTTCCTACATA

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129418 lncRNA upstream 5064 16166202 ~ 16169844 (+) True G95952
TU129417 lncRNA upstream 5064 16166278 ~ 16169844 (+) False G95952
TU129381 lncRNA upstream 46968 16070354 ~ 16127940 (+) True G95929
TU129315 lncRNA upstream 193410 15980690 ~ 15981498 (+) True G95877
TU129314 lncRNA upstream 194282 15979752 ~ 15980626 (+) True G95876
TU129522 lncRNA downstream 85078 16289823 ~ 16290420 (+) False kcnn1b
TU129574 lncRNA downstream 298400 16503145 ~ 16503811 (+) True G96070
TU129581 lncRNA downstream 388131 16592876 ~ 16593182 (+) True G96075
TU129582 lncRNA downstream 471462 16676207 ~ 16676577 (+) True G96076
TU129592 lncRNA downstream 567224 16771969 ~ 16772170 (+) True G96086
XM_039810532.1 mRNA upstream 1339 16170463 ~ 16173569 (+) True ndufa7
XM_039810528.1 mRNA upstream 9091 16131146 ~ 16165817 (+) False mast3b
XM_039812467.1 mRNA downstream 4629 16209374 ~ 16213553 (+) True LOC120566178
XM_039810981.1 mRNA downstream 11551 16216296 ~ 16225461 (+) True LOC120565304
XM_039810980.1 mRNA downstream 11551 16216296 ~ 16225461 (+) False LOC120565304
XM_039810979.1 mRNA downstream 16894 16221639 ~ 16225462 (+) False LOC120565304
XM_039810977.1 mRNA downstream 52113 16256858 ~ 16275695 (+) True slc5a5
XR_005640328.1 other upstream 1258302 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 1260875 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 1553495 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2792164 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2954536 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 115749 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 1650892 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 1661803 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 1663921 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 1666965 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile