RNA id: XM_039810935.1


Basic Information

Item Value
RNA id XM_039810935.1
length 4232
RNA type mRNA
GC content 0.45
exon number 2
gene id cldn34a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39816828 ~ 39823367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTAAGACTTTGGAGTATCTTTATTAGTCAGGTGTTAACAGCTTTTCTCTCACATAACCAAAGCAAAATGTAGACTATCCCTCCGGTTCATTCTCCTGTGATAAATAAAGCACCTGTGGAAGGGGGATTCAGTTTATATTTGGAACATCACATCGAAACTTAAGACTTGTCGAGGTGAGTGACAGGACAAAGGCCTTTTATTTCACTGCATAACACGAAGGATTTAAATGGACAATCATTAACTCCAGTAATGCTTTCACAGACTGTACCTACAGGCTTTCTCCTCACTTTGACTGCTGCCTTGAGGAGTTTGATTCTACTACCTCTCAACATAATTGatcaaaatttcaatttccaTTTTGGATGGTATTGAAGTTTATTCTAAAACTTGCCAAGGAGGTGCGATGGCTGTCAGGCACACTGTGTGAATTCAACAATGTGTTGGCTCAGCGGTCCGTCTCTCTGACCTTTAGCAATCACACCGGGCAGGATGGTTTACCTGGCTCACACAGCTCACCGGCAGTTCCTGGGCCTGATGGCCGGGGTCATGGCCTGGATCCTCATCATGACCACAACCGGCCTCAACGAGTGGCGGCTGTGGTACGTGGCCGATGAGTCCGTCATCACCTCGGGCGTGGCCTGGGTGGGCATCTGGAGGGCGTGTTTCTACAGTCATGTCCTTCCCAGGATAGAGAACTGTCAGAGCATCGGCATCTCGGACCCCTTTGCTCCTGCAGAGATCCCTGTGGCTCAGGTGCTGATGGTGCTGGCGCTGATCTGCGGCCTGGTGGGGAACATCACCGCTGCAGTGGCTGTGAGGATGGTCTACTTCTCTATAGAGAATCGTAGGAACATAAGGCTGGTCTTTGTGCTGGCAGGGACCCTGTATGTGCTGACTGGGACGTTGTCATTGGTGCCGTTGATGTGGAACATGAGCTCTGTGCTTAAAAACAGCACCATAGGCTTTCCTCCTGAGTTCCACCTCCCCGCAGCTCCTGTCAGGCAGCAAGTCGGCTCGGCCATCGGAGTGGGCATCTTCGCCTCCATCCTGATGCTCATAAGCGGGGCGCTTCTCCTCTGCTACCGCTACGCCTGGGCGGCCCTCAGCACAAAGGCCCCCAGAGACACCCGGGATCCGCTCCAAGGTCCCTGGACAGAAACAACCCTAGCGCAGAAGTCTGAATTCCTAGATGGAACCAACCAAGGCAGGGATAATCCTGCATTTCACAGAGAAGAAATCTCATGATGGCAAAACATCAGAACACTTCATTTACAATCTTGGATTTGGATCTTTTTAATCAATGGGAAAGTGACTTAGACAGTGTCATTGGGGAAAAGTTTAAAGATTTCAAGCCGAGTGCTGCTCACAACATTTCTTAATGACTAAAGACTTACAGAATGAGTTTAGCCTTTCTTGTGGAACATCAACCATGTTATATTACAAGAAACACTGTGGTATTGATTATATAGCTGCTTTAATATTCTACGTTAATACAGCATGTTATGTATGATATGCCCGCTGGCTTGTGTAAAGTGAAGCTCTCTTGGATTTGTGTTGCCAGAGTTCAGGGACGGACGCATATCTGCAGATGTTATCATAAACTTTATCTCTCCAGTGTTATCCAATAGTGCTGTTTGGAGTGAGCGATCTGAGCGTCTCTGTAATGACTGGGGGAGgtgacatgacatgacatgcCAAGGTGTGGGCTTCTAACGGGGCCCCATGTGAGGAAGGATCTTAGAGGGTCAAGTTGACTGGGGGCCCTGCTCATGTGACCTGGGTAGGAGGCTGACGAGAGCAGGCATGTGAGTCTGGAGAGGGGGCCGCCTCACAGTAGTGATTGTTGCCagggaagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcacctcTCTGGAGGAGGAACAAAAGGCCCTCTTCAGCTGAGTACAGCTCTCTGTCAAAAACACAAGTCCCAGAAGTGGATGAAAGGTAGCTGTGACCACTCGTGCAACATGGTGAGGTGCTCCATCACAGACTTGATGCCAGTAATCTGTAATAGGAGAACCACTGATATTAATTTAATTGAGTATAACCAGTATTCACATTCCTCTAGATAAGAGATTTTGGGAAAGTATTTAAATcattctttgtctctgtcttcaTCCACCCTCCCACCTCTCTCTTGCACATTCCCCTCTATAGATAAGCCTGACATAATCGCCTGAGCTGGTTATGTTTTATCTAATCTGTTATTCTAAGTCATATACTCTATCAGTTATAATAATTAATGGAGGAAAACTCATAAGAAGGCTctgagagaggaaggaaggtgATCAGTGCAATTAAAAACCCTCATGTCAAAGTATGTTGCCAAACGTACCATAGGTTTACAAAGATGGCATTTTATTTGCAGTTAACTAGATTCAAGAGAGATGACTGGGGGGGGTAAAGCTCCAAGCAGATGAGCAATTATGTTCTTTTATCTTCTTCAGAGATTCCTGCATCGGATGAACATTATTATAGCCAGGGCCATCTCCATGTAAGTAACTACAGTCATCTGAAAGATatagttactggttacttttcagatttgccataaaaaagaaagacatttatGATACGTTTTTTTCGTATTGTGCTTGTGACAAAAAAAGCAGTGCCTAGTTAGGACCCCTTGTTACAGATAAGTGTTTTATCAAAGCGTGATTTCCTctcttaaaggggaactccaccgattttacacatcaaagtctgtttacaggtgtTACACCTGTGTACCTTTGTGGCTTCAGGGGGAGCTGCGCCAAAGCTGTtaaattgcctcaagtgatgtcacttgcgTCAGCGTCGGCTGGAGCTGAAAACAAgtttataaatgaaataaatctggaggtgtggagttagaaagaagtggtGTAACCAGACATCCGTAGTCCGCTCCTAATCTCTGCTAGAGGCTAGCAGCTCAAGGCTACATTAGCCACAACTAGCATAACACACCTAAATGTCCAGGCTGAGCTTTTGGAAGTTAATGTAGGCGCCAGGTTTTGATAAGGAAAGAATGCATAGAACAAAAAAGACGACATCACTGCTTCTGCTGCAATGAttttgatcctttttttaaCCGTCCATCCTGAGTCCGACATGGTTATAGGACTGCAATGCTTAACCCGTAGAGAGAGCTCTTTTAAATTCTCAGATGGTTTCATTAAGATAGCTGTTCAAGGCTCATTTCCTCTCCCATTAATCATCTCACAACCCCAAAGATTTATCTTGCGACCCTCTAAAGCAGACCACGCCCTGGGGGCCATTTTTCTGTACTTATCAAaaggacttttacttttgatactttcagtacatttagctgaaaataaaggaacattATCATGATGGTTTATTTGTTCTGAGTATTGAGTACTGATTTCACAAAACTGCAATTCTTAACATGTTGCACTGACATCATATCTGATCAAAGTTTCTCCATGTACATCTGAACAGTCAGTGTAGAAAGTCACGTTACATGTAACAATGGGACAAAGTTGTACCTTTTCTAGAGGTACTTTGTTGTGCCTTTGTTTAAGGTACATTATTGATCCTCAAAAGTATAATAGTGTCCCTTTAGAAGGTACAAACAAGTAAGGTACAATTTTGTTCCATTGACTAAAGGTACAACAATGTACTTTTGAGGGTACCACCCCAGTGACACGCTTTTGTTCCTTAAAGGTActgttttgtacttttttcctTTGTGCTGTGAGAAGTTTgcttatcaatttttttttctggtttgcAGTCGGATGCATTTAAACATAATTAGTAGGCGACATGTCATTTCCTTAATGTTGCTGCACTGCCCGGCCCTAAAGCAAATGGAGTCTTACGGTAATCAAGGAGAACATCTCTGCAGTTGTTTTTCGCTGCCTCCCCTGCTGATAGCTGCTCTCACACTGGGAGACACCAGGCCCTCCCCTACAGCCTGCGTGGCGTCAGAGGATAGGAGGGTGCCTCTCGATACTCTCCATGTTCTCTGGCTCTGTGAGGCCTGGCTGGCAGAACCACTTTTTCTATCCTCAAAAGCAAAGTCTGTCATGTCTCGGCCCCCATATGCTTCTGTGACATCATTATCCCTTATTAACTTCATTCTATACACAAAAAGTACAATCATTAGAATGTGGAGGTTTAAAAGTCATACTTCTCCCATGCAATAACACATTT

Function

GO:

id name namespace
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136796 lncRNA upstream 76557 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA upstream 76865 39739347 ~ 39739963 (+) False LOC120565298
TU136732 lncRNA upstream 136302 39680078 ~ 39680526 (+) True G101519
TU136719 lncRNA upstream 250873 39564141 ~ 39565955 (+) False reps2
TU136689 lncRNA upstream 378763 39437654 ~ 39438065 (+) True G101484
TU136817 lncRNA downstream 48289 39871656 ~ 39872173 (+) True G101579
TU136839 lncRNA downstream 81669 39905036 ~ 39908510 (+) True G101600
TU136956 lncRNA downstream 161103 39984470 ~ 40018693 (+) True G101666
TU136964 lncRNA downstream 177538 40000905 ~ 40003839 (+) True G101674
XR_005640213.1 lncRNA downstream 220815 40044182 ~ 40045506 (+) True LOC120565265
XM_039810924.1 mRNA upstream 112 39775793 ~ 39816716 (+) True shroom2a
XM_039810925.1 mRNA upstream 112 39775793 ~ 39816716 (+) False shroom2a
XM_039810926.1 mRNA upstream 112 39775795 ~ 39816716 (+) False shroom2a
XM_039810929.1 mRNA upstream 112 39781512 ~ 39816716 (+) False shroom2a
XM_039810927.1 mRNA upstream 112 39799928 ~ 39816716 (+) False shroom2a
XM_039810939.1 mRNA downstream 5589 39828956 ~ 39863261 (+) False wwc3
XM_039810938.1 mRNA downstream 5590 39828957 ~ 39863261 (+) True wwc3
XM_039810940.1 mRNA downstream 19768 39843135 ~ 39863261 (+) False wwc3
XM_039810495.1 mRNA downstream 88263 39911630 ~ 39920790 (+) True tomm70a
XM_039810496.1 mRNA downstream 100191 39923558 ~ 39939407 (+) True tbc1d23
TU136718 other upstream 250873 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 352378 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 936223 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2326756 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2684523 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 691726 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1401724 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1402267 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1629307 41452674 ~ 41453306 (+) True G102165

Expression Profile