RNA id: XM_039812107.1


Basic Information

Item Value
RNA id XM_039812107.1
length 2393
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC120565956
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14236539 ~ 14245111 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctggcacttACAGCCATGCCActctcaaagttgcttagatcacctttctttcccattctgacattcagtttagAGTTCAGGAGATTGGCTAGACCTGGatgacacccctaaatgcattgaagcagctgccatgtgattggttgattagataattgcattaatgagaaatcttacaggtattcctaataatcctttaggtgagtgtattaTTCGCCAACAATTGGTTAATGTTTAAGGTTTACCACATTCTTGATTGTAGACTGAAATACAGCGGGGTGGAAAAGATGACAAATTCTTTGTGTGCAGACATTTAACTTGAATCCAGTTATGATGACCACCCATTCATTGACCAATCATTACCAAGCAAAGAACCCAGGATAAAATCAGAATTTTAAGATCTTGTAAGGAAAGACTTTGCTTCTTCAAATAATATTGCATAAATACTGTTACTATTTTAGTGTTATGTTTAGGCCTGGGTATCGTTTCTAAAATGTCCATTACCGTGACTCCAATACAGTGGCGTAGgcagaaatagtattttgggCAGGCCAGTACAAAAGTGAGTGGGCCATTTTTAAAAAGATGCAAAAGTAGCAAAAagcacaaactaaaaaaaaactgtttaccTTTCAACACACTGCATTACAACGGCAATAGCAGTACTGTCTACAACATGCTCAACCAACAAAGCTACAACAGTATAGACAAAAACCTGTCGATTTTAACCTATTCAggcaaaaatatatttgcaccgGCAGAACCAGCAGCATTGGCTCTGCACAGCACGGTTATAAATTAAccattttattgcacaaagtggcttcttgaatttccccttggggatcaataaagtatctatctattaactaaacatgaacccaaacagcagagaaggcgtttacatactgcatgacatagaatagcctacatcagacagAAATCGCACATGTAACATATCCTTTGTGCATTCATAACAGCATTGTTTCTTCAGGACTATGGTCAGATCATGAGCAGCAAATGCGctaccagcagtaaaagaaaataaaagaatgaaaacttccagccaagcattgtttaaattatgaaagatataatgaagAGTTGCCAGCAAAGCACCAAATCTTAGACAGTGTATCGAGTCCACGGCAGTGACAGGTTTAATATTATGAaagaaatcactttttctgggatttggggtgttattttgtgtctctggtgcttccacatgcatacaaacttggagaaaaaaaaaacatccatgctgttttgagtgagatacaggtttctgaatgtatcctgccttcagtctccgggggACTGGCCAAAATCGGCTGGACCGTCTACGTCATCggccgaaacatttgtGCACAGTGCAGGTGAAGCTGGAGTTGGGCCACAGAGCCCAGCTAAGGAAGAAGGTGACATCAGAAGGCTTCACCCACGACTGGATGGTGTTTGTCCGAGGGCCAGAGACCGGCGACATCCAGCACTTTGTAGAGAAGGTTGTCTTCTGCCTGCATGACAGCTTCCCCATATCCAAGAGAGTATGCAAGGAGCCTCCATATAAAGTAGAGGAGACAGGCAACACAGGCATTCTCATGCATATCGAGGTCCACTTCAAGAACAAGGAGCTGCCAAAAAAGATGTGTTTTAAGTACCAGCTTAACCTAGAGGGTGACCACCTGCGCTGTGAGATGCTCACCTTCAACAACCCCAACAAAGACTTCAGGAGAAAGCTGATCAAAGCTGGAGCGGTTATGGTATTTCCAAAGGGCACTGAGGCAGCAACAAGGTCCAGTCCAGACTCCTCTATACCCCCAACTAAGAAGATCAAGACCTCCCATGTGTCCGAGGAACCCAGCAAAGAATGAAGTAATGGCATCAGTCAATCTGCACAAGCCGACCAAGGAGCATCGTGATTGGCCCTGAAAAGACTCTGAGAGCAAAGCAGACGACAGAGGTGGAAGCAGCAAGAAATGTTAATTCTATAAGGTGCGCATGCAGTGTAGCTGACACTGGAAAGTGTATATTTGTTGCCATGACAACGGCGAAAATTAATTTAAGCAATCCGTATGATTGCTGGGTAATTTCAGTTttatacattattataaaacattGTTAACTGAATTTCGGGTTCTTTATGAGTTAAATCGAGTTGTATTTTGTCTTTTGGTATATTCAGTACGAACGACTTTTATTTTGGTAAGCTACAAGATACAGGACCGAATGTTTTTGGTGACGGGCGCAAACGGAGGAGAGAAAGGCGAACGTGAATAGCGAACTTTTAGCtcctgatttgtttttattctacTGCTGGTCTACCAGGCAAACACGTTTTCACGGTGTTCCATCATGCTTTCTTAAAGGAATAAAGGTGAATATGGACATCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128615 lncRNA downstream 28708 14207629 ~ 14208687 (-) False G95355
TU128614 lncRNA downstream 28897 14206356 ~ 14208498 (-) True G95355
TU128616 lncRNA downstream 29932 14206301 ~ 14207463 (-) False G95355
TU128602 lncRNA downstream 44392 14191559 ~ 14193003 (-) True G95347
TU128601 lncRNA downstream 48717 14186157 ~ 14188678 (-) True G95346
TU128667 lncRNA upstream 133342 14376875 ~ 14388496 (-) False G95388
TU128669 lncRNA upstream 133342 14376875 ~ 14459174 (-) True G95388
TU128666 lncRNA upstream 141848 14385381 ~ 14388496 (-) False G95388
TU128873 lncRNA upstream 535473 14779006 ~ 14783270 (-) False lhx9
TU128879 lncRNA upstream 561722 14805255 ~ 14805537 (-) True G95544
XM_039812106.1 mRNA downstream 3028 14209553 ~ 14234367 (-) True LOC120565955
XM_039810670.1 mRNA downstream 63563 14145325 ~ 14173832 (-) False rfx2
XM_039810669.1 mRNA downstream 63563 14145325 ~ 14173832 (-) False rfx2
XM_039810668.1 mRNA downstream 63563 14145325 ~ 14173832 (-) True rfx2
XM_039810526.1 mRNA downstream 162970 14065268 ~ 14074425 (-) False prg4b
XM_039812111.1 mRNA upstream 6187 14249720 ~ 14258346 (-) True acer1
XM_039812110.1 mRNA upstream 15829 14259362 ~ 14281238 (-) True myo1f
XM_039812112.1 mRNA upstream 38571 14282104 ~ 14342842 (-) True adamts10
XM_039812113.1 mRNA upstream 38571 14282104 ~ 14342841 (-) False adamts10
XM_039812114.1 mRNA upstream 38571 14282104 ~ 14324098 (-) False adamts10
unassigned_transcript_389 other downstream 324033 13913281 ~ 13913362 (-) True trnas-aga_8
TU128436 other downstream 402202 13825457 ~ 13835193 (-) False ivns1abpa
TU128437 other downstream 402202 13825457 ~ 13835193 (-) False ivns1abpa
TU128438 other downstream 402202 13825457 ~ 13835193 (-) False ivns1abpa
TU128128 other downstream 1506426 12727911 ~ 12730969 (-) True G94989
TU128848 other upstream 377755 14621288 ~ 14623012 (-) False dda1
TU129051 other upstream 1135974 15379507 ~ 15382862 (-) True G95680
TU129083 other upstream 1194639 15438172 ~ 15443239 (-) False LOC120565484
TU129772 other upstream 3311564 17555097 ~ 17555736 (-) True G96213
TU129841 other upstream 3623084 17866617 ~ 17875325 (-) True G96267