RNA id: XR_005640183.1


Basic Information

Item Value
RNA id XR_005640183.1
length 244
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id LOC120565050
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25520872 ~ 25521287 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaacgATACTTGAGAGAAATGGTTCTTTTGtgtacataaaaaaagtcttagatctttgagttcagctcataaaaaatgggggcaaaaacaaaagtgttgcgtttataattttgagtataaataaaattggcTTGACTTGACCCCATAACATTGAGACAGAGTCACACATTTTGATAGTGATTCCAGATAGGGCAACATTTCTCTTACCTGAGTGCAGGATCCCTCCATAAAACACAGacagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132480 lncRNA upstream 5130 25515050 ~ 25515742 (+) True G98188
TU132478 lncRNA upstream 8620 25511856 ~ 25512252 (+) True G98186
TU132466 lncRNA upstream 41268 25479348 ~ 25479604 (+) True G98177
TU132465 lncRNA upstream 41640 25423646 ~ 25479232 (+) True G98176
TU132450 lncRNA upstream 262386 25253473 ~ 25258486 (+) True G98163
TU132488 lncRNA downstream 36826 25558113 ~ 25560035 (+) True G98196
TU132489 lncRNA downstream 36826 25558113 ~ 25608391 (+) False G98196
TU132490 lncRNA downstream 36826 25558113 ~ 25572875 (+) False G98196
TU132603 lncRNA downstream 217844 25739131 ~ 25740549 (+) True G98280
TU132636 lncRNA downstream 265038 25786325 ~ 25837380 (+) False LOC120565749
XM_039811561.1 mRNA upstream 44637 25468399 ~ 25476235 (+) True abhd17ab
XM_039811667.1 mRNA upstream 53869 25458582 ~ 25467003 (+) True zgc:77486
XM_039811666.1 mRNA upstream 57429 25457253 ~ 25463443 (+) False zgc:77486
XM_039810768.1 mRNA upstream 63713 25444403 ~ 25457159 (+) False plin3
XM_039811164.1 mRNA downstream 80594 25601881 ~ 25613413 (+) True npl
XM_039811880.1 mRNA downstream 132575 25653862 ~ 25663704 (+) True sec22bb
XM_039811881.1 mRNA downstream 132575 25653862 ~ 25663704 (+) False sec22bb
XM_039810898.1 mRNA downstream 157249 25678536 ~ 25729476 (+) True notch2
XM_039811748.1 mRNA downstream 208938 25730225 ~ 25738789 (+) True slc35a3a
TU132285 other upstream 646998 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 646998 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 736991 24781918 ~ 24783881 (+) True G98012
TU131697 other upstream 2043054 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 2198963 23321522 ~ 23321909 (+) False pole4
TU132486 other downstream 11538 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 208971 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 470219 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 1271400 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2506685 28027972 ~ 28084387 (+) False pip5k1ca

Expression Profile