RNA id: TU132450


Basic Information

Item Value
RNA id TU132450
length 4325
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G98163
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25253473 ~ 25258486 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTTTATTACATTCTTAAATCCACATATTGTATCACCATTGTGCAATAAAACTTTACTGTGTTCAAACCTCTTGGGCTTTATACCCATAACATACCATAAATTATTTCTTATTAAAATCTAtattgatttaataataataatcttaaaataGAGTGAACATATAAACAAGGATCATGACAAGAGAAACTTTTAGGGAGACATCTTTAAAAAcgctcttttaaaaaaatagaattacATCTCTCCAAGACATAAAGAACACTAAACTGATGAGAAAAGAAACAGTACACATAGGGATAAAAAATTAAGAAACAAAAGATCACAACAAAACCAACACAAGATTCAGAGATAATAATCCATCttttatatttactgtactatgtttacttttttttaatatcctATTTAATCTATGActcaaactcaaaaaaaaaaaaaagtcttgcaATAATGATATTAGACAGGGGTAAAATCTTTGATACTTCTGAAGTCAAACATTCACAAGAACATGTACTGTACACAGTGATCAAGGTTTTAAGATCTTCTATTATGGTGCCACGTGTCTTGCTAGCTATAGACGAACTGCAGACACTGAAGGACAGAGAGCCCAGCTATCTCCCTGAGTAACAACCCTAACCGGAAATACAAGTGCAGATCTTCACTGCTGCCCACTGGACAGCTTATAGGCCtgcataaagtataaagtatacTAAATCCTTTCAAATCAGCATGTCTTACACTCCAAACACACAAAGTATTGCACTTTGTTACAATCTGTAAGTGTCATCTGTCGGTCATCATGTCAGCTGAGAGCTGACCTGTGTGTTGGTTGGCTGTATATTTGGTGCATTATATACATTATTTGTCATGCTGCGAGGTGTTGGAGTGCTTTCGAAAATGTACAGTAATACATAGCAACAAAGGCCCAACATACTGAGAATGGGAAAGACCTTATTGCACAATCCCACCATGCCACTGTTTTACGTACCCAGCAAAGAGTAATACCCCTTCATACTTTGTGAGATAATGTATGGTGAGGAGCACTGTCCCAGCAGTGCAAAGCAAACCAGGCTGACATATTAAATAGAGCCAGACATCCAAAATATGGCGTGTGATTGTCTTAAAATGCTTCAGATAAAAACAGCAACGATTACAACTATTCTTTTCTAGCAGCTTCTTTAGGACACTGGCAGAATGACACATATACAGAAATCCAATATGCCCCCCTACTTTGTAAAAAGGATTTCATCTGGACACACCCTCGTATCTCCAGAGACTTTACTTCAGATAGATCTGTATCTAAGTAGGGCTTCCTGGACCTGAACTGCTCTCAAATGACAGAAAAGCAGTCAGAGATGAGTAAGTACATCCAGCAGTTTAGTTTAGCTTTTTGTCTTCTATCCAGTTTTACGAgcataataatatattttaggAAAGTTTTGTCATCACTGGCCTTCAAATTTCACCACTAATCGTTACGTTTTTGAAGAAAATCTCTAGTATGTAAGCAGAAATACTAACTCAGGGGGGTAGCTGATGGCTCTGTCAACCCTTTGCTGTGCCATGTAGTGTTTGAAGAGGGTGAGGTAGTAAGGGAGCGCGGGGAAAAGGAACAGAGGAGCTAATTCTCCAATCAGAACACCTTGGCTTCCTGTGTCTGCCTCAACCCGAAGCAGTGAGAGTTGACGCAGACAGTAAATCCCCTCTAATTTATGACTAGGGAGCTTAAGAAACACCCTCACCCACAAGTCCACTCTCCTCATCCAACCATGTGGGTGGGAATGTGGTCAACTGTCACATTTCAACATCAAACTCTcagttcattttctttctttaaacccAGTCTTTTGAATCTGCTGGTTAAGACGCTGCTGGAGGTTTTGAGCCATGGCACTCTTCTGCACAGGGGGCCTGAGGTGTGACAGTTCCAGATGTTCCTCCACGGAGAGAGCACATAACCCCACAGTGGTCGGCTGCCCAGCACCTTGTTCACCCAGCTTACTGGATCTACAGTGGGAGGGCGTATCTAGCATTTCTGGCTGGTTTAATGTACGTTTTACAGATGGCAGTCTGAGTGTGAACCCGTAAAGTCTTGTGCCAATGGTTCATTTTGGATTCTAACAAGGACTCATAAGTGTCTTTCCAGCAATAACAATCTTTCCGTCCCAGAACCCCAAAGTTTGGGCAGGCAGTTTCTGTTTTTTAGAGAACTGAGCTCATGACTGCTCTTATCTTACATGATTCTaaaggttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattaaaaggaGCATCTGAAAATACTTTCAAAATACCTTTGTGATTCTCTCTCTCAAAGTGGCGTTTTCAAAGGGAAAAGGTATTAGGGCTGAGGTCACTGAttgcataaaaaaagaaaagagctcACCTATGTCAGTGTCTGTAGGTGTACTAGTAAAAATACCTACAAAGATAAGTGCCATGTGTTGGGCTCTGTAAGCAAGAGTTTGTAGGTGCACAGGGGCAGACACTCTAAATGTCTGCCCTTGATTCACACAGTTTAAAAACCCTGTCTGTTTGTGAGTTTGATCATGGTCCCTTTAAACAGTTTGTTCGTACATTACAAAACTGCAAAATATGGGTGCTACCGAAAATAATGAATGCAAATACTGCAAACCGCCACAAAGTGGGTGAGGATTTTAAGTATGTACATTCTATATCGAGCCTAGGGCTGTGCTGAAGGGTAAAGGGGAAAAGGGGGTTACATTCAACGATAGCTTACAGGAACTGTGAGAATGGTGAAAGTCAAATTCAGCTTCATGAGAGGTTTAAGGTCTTCTCatagaaaaatatttttgagAATACAAATGTCGGCTACTCTTTAATAAGTCCCTAAAAAAGAGGTAACATGCACTGCAGCAGCAGTTCCTATAGTGTTACGCTGAAGCTGAACGGACTGGCTTGCAGGGCAGTGTGAGCTACTCCACGGGGCTGGGAGCTCATCGGTGAGAGGAGTGTGTCCTAAAGTGTAGCGTGCAGGATTGTCATTGAGCTGCTGGTTGGTTTTAGCCTCAGCTGGTTGCCACATTATCTCCCCCTCCCTACACCTCAATGTCTCTGTTTGAATCCCGCTATTTAGCTAAACGTTGTTAGCCCTCTGTGGAGTCTGGGAAGGAGATTTCACTGCCAAAAACCTCCCGATACAGAGGAGGAAAGGTATATGCTGTCTCAGGGTGGACCAGACGGAAAAACTCCAGTTTGTCGATGTGAAGGTTGCAAATGGACTTCAGGATGGGAAGCTTGGACACCATCTGGCTAGTTTCTCTTCTGATGCTCCCTCTTTTTGTAGGCAGCGCTGCAGAGCCACGTAGACTTTCTCCTGCAACTTCTGTATCTTCTGAACATCTGTCAGCCAGGGTCGGTCTGAGAGATATTAGAGTGACAAGATGGTTTCATTTGGGTTGTCATGTTGCCAATTTGAAACTGCATCTGGTGAGGTTAACAATGTACAAACATCTAGGAGAAGAATAGGAGACTGGTCTCTGGATAGGGTGCACAGACTGAGTTGGTGAAAGTTAATTTATGATGTGAACACACAATATTTTGATTCTCCTTTGCTTCTTTTTACATATATGGATGGATAATGCAATCTGAATAATGCAGTCCTAAGAAAATAGGTCACAAAGTGAAACTGTATCCTAAGAAGCTACTTGCAAAGACTCGTTTTAGTTGGAGTGAAATTCCATTTGTCACAAAGGTCTTAAATCTGTAATTAATCATACTGCATAATGCATAATGATCCTGTCATTTTGCAAACGTGTTTGTGACAATAGCGACAGTAGTATAgtaaacaaactaaaaaatgaaaataaaaaatgttttgtaattTTTAAAGAGGTCATCCTCTGTTATTATGTTCACCTCTGAAACAGGTTTAAGACATGAAACTGAAAAACTGAAACTCACAACATCTAATTACCTGTTTATATTATGAATTATAGTATTGGTACAGCAACTTTCAGCAGTGCTGGTAAACATTCCTGTCTCCTAGTACAGACCAAAAGCCTTTAATGGACCAAATTTAGGTCATACTGAACAGTGGCCTGTATGGGTTTATTTCACCAATTTAGTATGATTGTAAAAACTACAGTGAGCATTAATCCATTCAGTGAAAGAAATATAATCTCACCTGGTGAAAGCAGCACAACAGCACTGAAGAGAGCCATCTCTTCCTCGGACATCTGTATACGGCTCAGGCTTTTAGCTAAGTCAAACACTGCATTCACAAGATCGTCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132401 lncRNA upstream 21073 25229382 ~ 25232400 (+) True G98123
TU132407 lncRNA upstream 61635 25191064 ~ 25191838 (+) True G98128
TU132293 lncRNA upstream 363097 24885420 ~ 24890376 (+) True G98033
TU132274 lncRNA upstream 377807 24837613 ~ 24875666 (+) True G98021
TU132270 lncRNA upstream 417956 24833437 ~ 24835517 (+) False G98019
TU132465 lncRNA downstream 165160 25423646 ~ 25479232 (+) True G98176
TU132466 lncRNA downstream 220862 25479348 ~ 25479604 (+) True G98177
TU132478 lncRNA downstream 253370 25511856 ~ 25512252 (+) True G98186
TU132480 lncRNA downstream 256564 25515050 ~ 25515742 (+) True G98188
XR_005640183.1 lncRNA downstream 262386 25520872 ~ 25521287 (+) True LOC120565050
XM_039812468.1 mRNA upstream 25192 25219482 ~ 25228281 (+) True mpnd
XM_039810945.1 mRNA upstream 74720 25096838 ~ 25178753 (+) False LOC120565286
XM_039810944.1 mRNA upstream 74720 25096839 ~ 25178753 (+) True LOC120565286
XM_039812027.1 mRNA upstream 169551 25069211 ~ 25083922 (+) True ssbp3b
XM_039810770.1 mRNA downstream 185913 25444399 ~ 25457159 (+) False plin3
XM_039810767.1 mRNA downstream 185914 25444400 ~ 25457159 (+) False plin3
XM_039810768.1 mRNA downstream 185917 25444403 ~ 25457159 (+) False plin3
XM_039810769.1 mRNA downstream 189948 25448434 ~ 25457159 (+) True plin3
XM_039811666.1 mRNA downstream 198767 25457253 ~ 25463443 (+) False zgc:77486
TU132285 other upstream 379599 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 379599 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 469592 24781918 ~ 24783881 (+) True G98012
TU131697 other upstream 1775655 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1931564 23321522 ~ 23321909 (+) False pole4
TU132486 other downstream 274339 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 471772 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 733020 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 1534201 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2769486 28027972 ~ 28084387 (+) False pip5k1ca

Expression Profile