RNA id: XR_005640304.1


Basic Information

Item Value
RNA id XR_005640304.1
length 173
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120565916
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9908907 ~ 9912100 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTCCTTACCCAAAATACATGGTGCACATTGACACCAATCACAAGCTCATCAGATGATGTACCTCAAGGTAGCAGACAACAACTGATCTGATACACACCTGGCATTCTTCAATGAAGCTGTGAATGAGCATGGGTTTCCTCTGAGaGTGAGAGGAGATCACGGAGGAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127336 lncRNA upstream 6785 9901195 ~ 9902122 (+) True G94373
TU127173 lncRNA upstream 215874 9691929 ~ 9693033 (+) True G94266
TU127155 lncRNA upstream 229170 9673431 ~ 9679737 (+) True G94259
TU127153 lncRNA upstream 236104 9662132 ~ 9672803 (+) False G94259
TU127124 lncRNA upstream 357216 9547714 ~ 9551691 (+) True G94238
TU127377 lncRNA downstream 69322 9981422 ~ 9983844 (+) True G94400
XR_005640261.1 lncRNA downstream 73619 9985719 ~ 10159881 (+) False LOC120565490
XR_005640260.1 lncRNA downstream 73753 9985853 ~ 10159881 (+) False LOC120565490
XR_005640262.1 lncRNA downstream 76767 9988867 ~ 10159881 (+) False LOC120565490
XR_005640259.1 lncRNA downstream 162085 10074185 ~ 10159881 (+) True LOC120565490
XM_039811524.1 mRNA upstream 43452 9851125 ~ 9865455 (+) True LOC120565621
XM_039811523.1 mRNA upstream 62632 9844271 ~ 9846275 (+) True LOC120565620
XM_039811353.1 mRNA upstream 111918 9785792 ~ 9796989 (+) True LOC120565507
XM_039811520.1 mRNA upstream 123767 9766076 ~ 9785140 (+) True hps3
XM_039812222.1 mRNA upstream 237119 9614795 ~ 9671788 (+) True fnbp1l
XM_039811407.1 mRNA downstream 21513 9933613 ~ 9948237 (+) True ttc14
XM_039811649.1 mRNA downstream 55254 9967354 ~ 9979742 (+) True fxr1
XM_039811652.1 mRNA downstream 55254 9967354 ~ 9979742 (+) False fxr1
XM_039811653.1 mRNA downstream 55254 9967354 ~ 9979742 (+) False fxr1
XM_039811650.1 mRNA downstream 55254 9967354 ~ 9979742 (+) False fxr1
TU127346 other upstream 5718 9902285 ~ 9903189 (+) True G94376
TU127191 other upstream 29709 9817621 ~ 9879198 (+) True G94281
TU127196 other upstream 62926 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 63103 9844749 ~ 9845804 (+) False LOC120565620
unassigned_transcript_387 other upstream 336538 9572298 ~ 9572369 (+) True trnah-gug_12
TU127361 other downstream 35006 9947106 ~ 9948230 (+) False ttc14
TU127375 other downstream 162106 10074206 ~ 10159807 (+) False LOC120565490
TU127611 other downstream 1004825 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 1034876 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 1336475 11248575 ~ 11248647 (+) True trnam-cau_8

Expression Profile