RNA id: TCONS_00006689


Basic Information

Item Value
RNA id TCONS_00006689
length 2467
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_003421
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 22109887 ~ 22169026 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCAGGCTCGATCTGactgactgagtgagtgagtgagtgcgcgctgctgctgctgcacaaGAAAACACTGACGAGCGACTCAACAACTTTATCATAACTGGAAATTAACTAAATCTGAGAGGAAAACCTTTTATAACTGTTTACATCTCATGTTTCTTGTCTCCCACTCGCGTAGTGAGAAACGGCACACTGTTTTATCCACTTTACGATGTTTTCTGTCAAGTTTTTCTGACTTTGGGAGAGCTTGAAGACGAAGATAAATATCTTGATTTATACAACGCTTGATATCACAAAGCAAGCAAACAAAAGAGGAACAACGAGTGTCAACGTTGATGTAAATAAAGAAAGTTTAATagttgaagagagagagagagatacatgAAGAGAAAGAAAGGACTTTTCCCCCGCTGAACGGGACACTTGAAAGTTTGTTTTGCGCGAGCATTAAAAGATGCATCACTGAAACAACACTGGTTCCGAGCGACCATTGCAGggTAATTTCTAGTCACCTGGCATCTGGGTCCAGAACAGATGTCCAAAGAGGACCACAGCCATAGTGCCAGCCCACCCGAACCTCCAGATGGAGCCCAACCGGAGAGACTGTCGGATGAAACTGTCTCAAACCCAGAAGGGAATGAAACCGGTGAGCAGACAGCACAGAACTCAAACACCCCACCCATGGAAAAGACAGGAGACGTGGAGaatggcaacaacaacaacagcctgTCCCAACCGGACCTCACCAGCACTCCTGGCAAAAGCATAACATATCAACCTCAGGCACGCTCTACACCCATAAACCCCACGCTAACCAGCTCCACTGAATCAGCCACGCTGCTGAGGAGAGACAGCAAGCCACACAGCAATGGGGTGAGAAACGGCACCTTCTCACGAGCtgcctcttcatcatcctcatcttcatccaCAGCCCATAAAAACCCTAAGAAGTTACAGTCGAACCCATCCATCAACAGTCAGAGGAGCAAAGGAAGCTCCAAATCCAACAGCTCCAAGATCCCCACAGAGGCCCAGGATGATTGCTGTGTCCACTGCATCCTGGCCTGCCTGTTCTGCGAGTTCCTCACACTGTGCAACATCGTGCTGGACTGCGCCACGTGTGGCTCCTGCGCATCAGACGACTCCTGCTTCTGCTGCTGCTGTGCTTCAGAGGAATGCGGCGACTGTGACCTGCCCTGTGACATGGACTGCGGAATCATCGACGCCTGCTGCGAGTCTGCAGACTGTCTGGAGATCTGCATGGAGTGCTGCGGCCTTTGTTTCTCCTCCTGAGACTGATCTGAGACCTGAGGAGAAACGAGCAGACAATGACAGACGCAAACCTAGCTGTGAGTTACAGTCAGGTAGCTTTCTTATGAGGTTAGTGGTCCAACACTAGTGGTGTTATTCTGAAATAGTCGTATACATGCTTATGAATTTCTTCTGGAATGGTTTCTGCTTTAATGTGCTTTGTTGAGTCTACATTGGCGTGACGCTGAATACAAACACATCGACTGAGGAAAAACTAAAATCATCTAAGCGCCAAGCTTTTGATAAAAGCACAATCGACAGGCACCCAGTGGTTTACAAATTCCACAATAATGCACGCCGGAAAAGAGCTTGAACAATGCAGTATCATTAAAAAGCCTCTCAAGGAAGACTAATCCAAAGATCACATACACAGTCAACACTATTTTGTAATGTTAATCCCAAATATCACCTCTCAGTACGCACACTTACTGTAGTACACTGGTGTAGTCCTTTGAGGATTACAAAAGCCATAAACTGTGAGTGTGAAACTCATAGATGTATGCGAGCGGGAGAACGACGTGTGTATTTAATATATGGTGCCATGCTACAGTTGTATTTTAGATTGTATATAAACGTGAAGAGAATCCTGTCCGTCTCCACATTTGCTCTTGTGATGTTCGTATTCTTATTTTTCTGTCGTTTTTCACTTCATTAAGCAGTCTTACTCGTACTGGAATCATACTGTAAACGGTTGTGAATTGCTcccatattttttccccaatgtgAAATGTCTGCCTTGTAATTCCAAAACTTTCCATttaaagaagtgtgtgtgtgaatctaaaTGTTTGATTATCTATCTACCTATTGTTTATGTAGTAAATGCCTAgcattagcagtattattttatCCTTTGCAAAAAAAAGTCAGGTTTCTTTACAGCCAGGTTCAGACTACATGATGATATTTTAATCCACGACCCATTTGATGTTGGTGAATTCTTGCTAAAGCATAAACAACAATAAGCACATATTTGATCTTGTCTCTGGGGTCAGTTCTTATGCTAATTACTCTGTTAGCTGCATTTGATTATTGATGCAAAATTCAAACCTGCTTGGGAGCTGCTTATTTTATATCAACAGCATTAGATTGTCATTTCAAGCTGGTGATACTTGATGTAGCAGtggctgatttttaaaaatattttatatatatata

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-84 Is expressed in several structures, including neural plate; paraxial mesoderm; pectoral fin; pectoral fin bud; and presumptive diencephalon. Orthologous to human MDFI (MyoD family inhibitor).

Ensembl:

ensembl_id ENSDART00000122136

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008600 lncRNA upstream 206193 21902677 ~ 21903694 (+) True XLOC_003419
TCONS_00008598 lncRNA upstream 350862 21612707 ~ 21759025 (+) False XLOC_003417
TCONS_00006696 lncRNA downstream 430885 22596726 ~ 22599593 (+) True XLOC_003423
TCONS_00008601 lncRNA downstream 754628 22920469 ~ 22927188 (+) True XLOC_003426
TCONS_00008603 lncRNA downstream 1428508 23594349 ~ 23597671 (+) False XLOC_003430
TCONS_00008602 lncRNA downstream 1428508 23594349 ~ 23597671 (+) True XLOC_003430
TCONS_00008604 lncRNA downstream 1729688 23895529 ~ 23902690 (+) False XLOC_003432
TCONS_00006688 mRNA upstream 15495 21910752 ~ 22094392 (+) True XLOC_003420
TCONS_00006687 mRNA upstream 147053 21910343 ~ 21962834 (+) False XLOC_003420
TCONS_00006683 mRNA upstream 511360 21586335 ~ 21598527 (+) False XLOC_003416
TCONS_00006684 mRNA upstream 511479 21587950 ~ 21598408 (+) True XLOC_003416
TCONS_00006681 mRNA upstream 970384 21137948 ~ 21139503 (+) True XLOC_003412
TCONS_00006692 mRNA downstream 208578 22374419 ~ 22582127 (+) False XLOC_003422
TCONS_00006691 mRNA downstream 208578 22374419 ~ 22582127 (+) False XLOC_003422
TCONS_00006693 mRNA downstream 208578 22374419 ~ 22584452 (+) False XLOC_003422
TCONS_00006694 mRNA downstream 208912 22374753 ~ 22547279 (+) False XLOC_003422
TCONS_00006695 mRNA downstream 208912 22374753 ~ 22582435 (+) True XLOC_003422
TCONS_00006686 other upstream 459249 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 1057543 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006668 other upstream 2076702 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006652 other upstream 3019075 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006645 other upstream 3433330 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006698 other downstream 548174 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006700 other downstream 1231429 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006723 other downstream 2012982 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006731 other downstream 2173521 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006732 other downstream 2173533 24339374 ~ 24345421 (+) False XLOC_003446

Expression Profile

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