RNA id: TCONS_00067642


Basic Information

Item Value
RNA id TCONS_00067642
length 1744
RNA type mRNA
GC content 0.36
exon number 5
gene id XLOC_034760
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26445742 ~ 26457812 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACTCCAGAAGAAAGGCTTAACATTTCTGATCCTCGGTTTAACAAAATACTAACATTATGTGTACCGGAAAGTGCGCCAAGTTTATTGGCATCAGTCTCTATCCGTTGGCGCTAGTGTCCATTCTCAGCAACATCTTTCTGTTCTTCCCTGATTTTAAAACCGACTACGCTGTGGAGGATGCGGACGGAGAGTACCGTCTGACAGATGAGATCAAATACATGGGAGGTGTTGTTGGAGGCGGCATCTTGGTGCTGATCCCTGCAATTCACATTCATAGCACTGGGAGACAAGGATGCTGTGCAAACCGTTGTGGGATGTTTCTGTCCATCATCTTTGCAGCAATTGGTGTGGTGGGTGCCTTCTATAGCGGTGCCGTAGCTGTGGTTGCATTGCTTAAAGGGCCAGTTTGCAGGATTGATAATGGACAATGGACCAGACCATTCCACAACAGTACTGAAAACTACCTGGGAAACTCTGACACCTGGACGATTTGCGAGGAGCCAGAAAACATAGTGGAGTTTAACCTGGGCCTGTTTGCCATTTTGCTTGTGGCTGCTTGTTTAGAGCTGCTGCTCTGTGGCTTCCAGGTGTTCAACGGCCTGTTCGGCTGCATTTGTGGTACATGCAATCGCAAAGAGGAGGCTTAAGTTCAGGACGACACCAGATAACACAGCATCGGTGATACCGGTAATAAGTCAGAAAGGACCTGCAAAACATACTCTACCGTCCAACATTATATGTTGTCCATATATTTTGCACATGTAATATTGAATAATAGATTGACAAACACTCCATGTGGATAAAAGCGTcctatttttgtataaatgtaaatatgttgaaGTTGAATTATGTTTTTGCTCATTTTATGTTGTGAATTAGGCAGATtacattacaattttattataatgttgttcaaatgtatgtttttatatgaataGAAATTGTATACAGATGATTTTCTTAtctgtaaataaacaacaacaaaacagttttgagtttatttttgttgttgaattACATTTATGCAAGGTTATCAAGAGTAATAACTCTTGCGATACCAGACAGAGTCAGTTCCAGTTGCAGTTTATTGTGGAGATAGTgtaagattttaatttaaaacaaaatcagatAATAACGTTTTAGTCAGGCAGAGATCATTGTCTATGGTAAATGTACCACATATCCTGTTTTAGTGAAAACACAGTAAAGATAAAATTTAGAGAACAACCTATTTCCTAAGTTTGAAGGTCACTGCTTAGTTCTTACTAACAGGAATAGATCTCTTAACAGATGTAAAAGagtattttaagcatatttcatgagtcAAATATATTCTAAAACCTAGTATAAAAACTTAAATCagatatttgaaaatatattaaaatttagCGAACACTTTCAGAAATTTTGCAGTAATTGGTTTTAATTTTGCACATGTTGgaaaattcataaatattttacaaaaccaGGTTGTCTGGCAGccaaactttttagtttttacaagTTGTCCAGATTAAGGACGTAGGAGGCCATTTTATCCAGAACAAGATTGGCTGATCATGCCAAATCTACAATTTCTAGAATTGCATCTTAATAAGGTCATTAATGCATTCAAATCCTCTAAAAAGGCTGATAATAAATGCATACACTAcctaaaattattctgttcattaaggcggcatttattgtatgtaaaacaattgtaatttgttaaaaaaaaataaagaaataattttaaataa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-103 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in positive regulation of Rho protein signal transduction and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000173519

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069218 lncRNA downstream 109917 26341317 ~ 26341952 (-) True XLOC_034755
TCONS_00069216 lncRNA downstream 110174 26335477 ~ 26341695 (-) False XLOC_034755
TCONS_00069217 lncRNA downstream 110701 26340598 ~ 26341168 (-) True XLOC_034756
TCONS_00069215 lncRNA downstream 121174 26330338 ~ 26330695 (-) True XLOC_034754
TCONS_00067635 lncRNA downstream 145315 26304540 ~ 26306554 (-) True XLOC_034753
TCONS_00067648 lncRNA upstream 54660 26511868 ~ 26513893 (-) False XLOC_034763
TCONS_00069219 lncRNA upstream 54660 26511868 ~ 26514061 (-) False XLOC_034763
TCONS_00067649 lncRNA upstream 55327 26512535 ~ 26514061 (-) False XLOC_034763
TCONS_00067651 lncRNA upstream 57111 26514319 ~ 26515322 (-) False XLOC_034763
TCONS_00067652 lncRNA upstream 57640 26514848 ~ 26518059 (-) True XLOC_034763
TCONS_00067640 mRNA downstream 5143 26445742 ~ 26446726 (-) False XLOC_034760
TCONS_00067638 mRNA downstream 15389 26429941 ~ 26436480 (-) False XLOC_034759
TCONS_00067639 mRNA downstream 15433 26429942 ~ 26436436 (-) True XLOC_034759
TCONS_00067637 mRNA downstream 43397 26393751 ~ 26408472 (-) True XLOC_034758
TCONS_00067636 mRNA downstream 61961 26366451 ~ 26389908 (-) True XLOC_034757
TCONS_00067644 mRNA upstream 2152 26459360 ~ 26462831 (-) False XLOC_034761
TCONS_00067645 mRNA upstream 2152 26459360 ~ 26467404 (-) True XLOC_034761
TCONS_00067646 mRNA upstream 37375 26494583 ~ 26497947 (-) True XLOC_034762
TCONS_00067647 mRNA upstream 53619 26510827 ~ 26518086 (-) False XLOC_034763
TCONS_00067653 mRNA upstream 61635 26518843 ~ 26532089 (-) True XLOC_034764
TCONS_00067631 other downstream 146993 26300795 ~ 26304876 (-) False XLOC_034753
TCONS_00067608 other downstream 660514 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067607 other downstream 688571 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067600 other downstream 1160717 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067584 other downstream 1597971 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067650 other upstream 56614 26513822 ~ 26513960 (-) False XLOC_034763
TCONS_00067676 other upstream 1700346 28157554 ~ 28157668 (-) True XLOC_034779
TCONS_00067677 other upstream 1822963 28280171 ~ 28280285 (-) True XLOC_034780
TCONS_00067689 other upstream 2121241 28578449 ~ 28578565 (-) True XLOC_034787
TCONS_00067695 other upstream 2252723 28709931 ~ 28717559 (-) True XLOC_034791

Expression Profile

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