RNA id: TCONS_00067650


Basic Information

Item Value
RNA id TCONS_00067650
length 139
RNA type snoRNA
GC content 0.45
exon number 1
gene id XLOC_034763
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26510827 ~ 26518086 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTGTGATGATCCCCATGCGTGTCAACTGATCCCAGACTCCCTGCAGTGCTCAATGTCTGATGAGCGTTTTGCTCAACAGTGCATTTTGAGCCTGTAGGACTCTGGGAACTTGATCTTAACTTTTAAATCTGAAAAC

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000117529

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067643 lncRNA downstream 56624 26454150 ~ 26457198 (-) True XLOC_034760
TCONS_00069218 lncRNA downstream 171870 26341317 ~ 26341952 (-) True XLOC_034755
TCONS_00069216 lncRNA downstream 172127 26335477 ~ 26341695 (-) False XLOC_034755
TCONS_00069217 lncRNA downstream 172654 26340598 ~ 26341168 (-) True XLOC_034756
TCONS_00069215 lncRNA downstream 183127 26330338 ~ 26330695 (-) True XLOC_034754
TCONS_00067651 lncRNA upstream 359 26514319 ~ 26515322 (-) False XLOC_034763
TCONS_00067652 lncRNA upstream 888 26514848 ~ 26518059 (-) True XLOC_034763
TCONS_00069220 lncRNA upstream 41190 26555150 ~ 26566216 (-) True XLOC_034765
TCONS_00067656 lncRNA upstream 62236 26576196 ~ 26579449 (-) True XLOC_034766
TCONS_00069221 lncRNA upstream 468143 26982103 ~ 26983922 (-) True XLOC_034772
TCONS_00067646 mRNA downstream 15875 26494583 ~ 26497947 (-) True XLOC_034762
TCONS_00067645 mRNA downstream 46418 26459360 ~ 26467404 (-) True XLOC_034761
TCONS_00067644 mRNA downstream 50991 26459360 ~ 26462831 (-) False XLOC_034761
TCONS_00067642 mRNA downstream 56614 26451869 ~ 26457208 (-) False XLOC_034760
TCONS_00067640 mRNA downstream 67096 26445742 ~ 26446726 (-) False XLOC_034760
TCONS_00067653 mRNA upstream 4883 26518843 ~ 26532089 (-) True XLOC_034764
TCONS_00067654 mRNA upstream 53904 26567864 ~ 26579465 (-) False XLOC_034766
TCONS_00067655 mRNA upstream 54026 26567986 ~ 26571994 (-) False XLOC_034766
TCONS_00067657 mRNA upstream 66541 26580501 ~ 26601307 (-) False XLOC_034767
TCONS_00067658 mRNA upstream 67684 26581644 ~ 26603743 (-) True XLOC_034767
TCONS_00067641 other downstream 56010 26446020 ~ 26457812 (-) False XLOC_034760
TCONS_00067631 other downstream 208946 26300795 ~ 26304876 (-) False XLOC_034753
TCONS_00067608 other downstream 722467 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067607 other downstream 750524 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067600 other downstream 1222670 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067676 other upstream 1643594 28157554 ~ 28157668 (-) True XLOC_034779
TCONS_00067677 other upstream 1766211 28280171 ~ 28280285 (-) True XLOC_034780
TCONS_00067689 other upstream 2064489 28578449 ~ 28578565 (-) True XLOC_034787
TCONS_00067695 other upstream 2195971 28709931 ~ 28717559 (-) True XLOC_034791
TCONS_00067699 other upstream 2641435 29155395 ~ 29155511 (-) True XLOC_034795

Expression Profile

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