RNA id: TCONS_00069220


Basic Information

Item Value
RNA id TCONS_00069220
length 425
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id XLOC_034765
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26555150 ~ 26566216 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAATCTGTATTTATCAGCGGTACCGTACAGCAACTCTTCAGGATTCCAATCACAGCGATGCAGAGCTTTCTGAACCTCCTCATTGGTCACTCCATGCACCGCAGCCTGCACCTGATGACCGATCAGAATTAAACATCTACCTGTCTGCCAGAAAGCCCCAACCAGGGTTCCTCACAGTAAGTGAACATTTCCCACAACGTGACACCAAACATCCAGACGTCTGAAGCATGAGAGAAAGATCCCGTACGCAAACTCTCAGGAGCACACCTGTGGAAGGAAAGAAAGATGCTGGAATTACTGTCCTGTATTTAATTGGATGATTGGCTAGAAGTGTAAAAAAAATGATATCTCAAAATTTCTGCCGATTTCTTCAGTATTTTATAAACAGTATTTTTGTTGAGTTTTATTTTGTGCTAGTACCTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067652 lncRNA downstream 37091 26514848 ~ 26518059 (-) True XLOC_034763
TCONS_00067651 lncRNA downstream 39828 26514319 ~ 26515322 (-) False XLOC_034763
TCONS_00069219 lncRNA downstream 41089 26511868 ~ 26514061 (-) False XLOC_034763
TCONS_00067649 lncRNA downstream 41089 26512535 ~ 26514061 (-) False XLOC_034763
TCONS_00067648 lncRNA downstream 41257 26511868 ~ 26513893 (-) False XLOC_034763
TCONS_00067656 lncRNA upstream 9980 26576196 ~ 26579449 (-) True XLOC_034766
TCONS_00069221 lncRNA upstream 415887 26982103 ~ 26983922 (-) True XLOC_034772
TCONS_00069222 lncRNA upstream 418729 26984945 ~ 26995403 (-) True XLOC_034773
TCONS_00069223 lncRNA upstream 1812808 28379024 ~ 28388028 (-) True XLOC_034781
TCONS_00069224 lncRNA upstream 1858665 28424881 ~ 28463403 (-) True XLOC_034783
TCONS_00067653 mRNA downstream 23061 26518843 ~ 26532089 (-) True XLOC_034764
TCONS_00067647 mRNA downstream 37064 26510827 ~ 26518086 (-) False XLOC_034763
TCONS_00067646 mRNA downstream 57203 26494583 ~ 26497947 (-) True XLOC_034762
TCONS_00067645 mRNA downstream 87746 26459360 ~ 26467404 (-) True XLOC_034761
TCONS_00067644 mRNA downstream 92319 26459360 ~ 26462831 (-) False XLOC_034761
TCONS_00067654 mRNA upstream 1648 26567864 ~ 26579465 (-) False XLOC_034766
TCONS_00067655 mRNA upstream 1770 26567986 ~ 26571994 (-) False XLOC_034766
TCONS_00067657 mRNA upstream 14285 26580501 ~ 26601307 (-) False XLOC_034767
TCONS_00067658 mRNA upstream 15428 26581644 ~ 26603743 (-) True XLOC_034767
TCONS_00067659 mRNA upstream 50025 26616241 ~ 26627252 (-) False XLOC_034768
TCONS_00067650 other downstream 41190 26513822 ~ 26513960 (-) False XLOC_034763
TCONS_00067641 other downstream 97338 26446020 ~ 26457812 (-) False XLOC_034760
TCONS_00067631 other downstream 250274 26300795 ~ 26304876 (-) False XLOC_034753
TCONS_00067608 other downstream 763795 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067607 other downstream 791852 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067676 other upstream 1591338 28157554 ~ 28157668 (-) True XLOC_034779
TCONS_00067677 other upstream 1713955 28280171 ~ 28280285 (-) True XLOC_034780
TCONS_00067689 other upstream 2012233 28578449 ~ 28578565 (-) True XLOC_034787
TCONS_00067695 other upstream 2143715 28709931 ~ 28717559 (-) True XLOC_034791
TCONS_00067699 other upstream 2589179 29155395 ~ 29155511 (-) True XLOC_034795