RNA id: TCONS_00067657


Basic Information

Item Value
RNA id TCONS_00067657
length 3230
RNA type mRNA
GC content 0.39
exon number 8
gene id XLOC_034767
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26580501 ~ 26603743 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATCGTGGTGCTGATAGACAGACATTGGATCTGAAAGTCAAAGATCTACCTTCAACATGTCTGGACCAGGCTACCCATCTCCAAACCAGCCTCCATATCCCATGTCACAGCCGGGTGGACACTCCATGCCACCCTATCCAATGGGAGGTTATGGAGATCCTGGGCAAAATGCACCACCAGCAGGATTCCAAGTAGGGTACCAACCAGTTCCAGATCAGCCAATCATGTATCAGCCTGGTCCAGTTAGTCCAGGACCTCAGCCGGGTCAACCGTACGGAGTGCCTGCAGCTGTACCTGCACCAATAGCAGTGCCTGCTGGAGTACCACCGGGTCTGGAGTACCTCACTCAGATTGACCAGATCCTTATTCATCAGAAAGTGGAGTTGTTGGAGGCATTCATTGGCTTCGAGACCAACAACCAGTACGAGATCAAGAACAGTCTGGGTCAGAAGATCTACTCCGCCAAAGAGAAAAATGACTGCTGCACACGCAACTGCTGTGGTGCCCTGCGCAGCTTTGACATGAAGATCAAAGACAATATGGACCGAGAGGTCATACGACTGATCCGACCTTACCGCTGCGTGTCCTGCTGGTGCCCCTGCTGCCTGCAAGAGATGGAGATTCAGGCCCCTCCGGGAACCCCCATAGGCTACGTAAAGCAGGACTGGCACCCCTGTTACCCCAAATTCTCCATCATGGGACCCAACAAGGAGACTGTGATGAAGCTTGAGGGGCCCTGCATGGCCTGCAACTGCTGTGGAGACGTACACTTTGAGctcAAAGGCAAGGATGGCACTGGGAAGCCTATTGGTCGGATCAGTAAGCAGTGGACTGGTCTGTTGAAGGAAGTCTTTACCGACGCCGACAACTTCGGTATTCAGTTCCCTCTGGATATGGATGTTAAGATGAAGGCTGTACTTATGGGAACTTGCTTTCTTATCgATTTTATGTTCTTTGAGAAAGTTGGAGACACAAACCAGCGCAACACTGTGTTCTCTTAAAGCTCCTAACACATTACTCACAAATCTGCTTATTTTCTAACTAACAGATCAGTCTGGAGGATTTTCAGGTTTGGTTTTTTTTAAACTACGTCCACTGGATGACCTCATATTCTGGATTTTGTTAATTTTCTACATTGGCCACCAAAGCCTACAACAACTGCCACTGCACTGCAACCAGAAACACGCTGAGGGTTATTGTATAGCGTTCATGTGATCAGAAATGTTTACGTTGACAAGCATGATGTCATCATGAATAACTGTCCACTGGTGCCTTTTACACACTCACTGCCTACAGTAATTACAAACCACTGTTCCAGCAGTACAAGCAGATGCATTTATACACCTTTGTTACTAAAAATATCATACACCGTTACATGCAACTATGTGGATGTTTTTTCTAAACCTATCTCTTGCAtaaagtacatatatatatttttttggaattTAAGTTTTATTGTGGTAAATGTATAGCCTTTTGTTACAACAGCCAAATATGACATTATGAAGAGGTTACATAACGAGTTACACTTTAATAATTTACTGACTCCGGCAACAGCTGAGAGAAGGAAAAAAGCAagtagatttattttttgtttgtgtttgtagatTTAAAGCAGATAGAATGTCATTttgtaataatagttttttttccagGAAATGAAGAAGTGTCCTACAGAGGGCGCTTGATACAGTACATATCTacacaaaaaaaatgtctaaacCTGAACATCTATTGACATACTATAAAAAGAATATGCATATATGATCTATAATTTTCAAGAGTGAACTTAGGTGACCGGTAAGAGGTAAATCTAAGATGCTCCTAAATATTTCTGGGTATTTGCCTGCTATTTTATGCCATATTTTGACATTGTAGTCTTGGCTGGTTGTGTAGAAACTAGCATTATACCAAAAGGGCAATATACTGAAAATAATTAGCCATGTTTAAAAACGTTTTGTTTATTGTCTGTTTAGATGACCAATAGAGATGCATGCATATATGATTTCTTGTTAATGTGACTGTATTTATTTGCCTAATAGGCAAAACGAGTAGTAACATTTTACATAATAAATGCGTAATCTTATGTCGGTGGTTTGCGTGATTtatatttttactgcatttacaCTCAAAAAGACAACTCTGGATTTATAGTAAAGGTCATGTATGAATTAGAATATTTATAATTGCAAAAATCCAAAGTATATTCAAATTTTGTTCAAACAAACCTAGTGTAGTGCTGAATTTAAAGCTtcaacttaaaataaacaaactattgaTGTCTTGTTACAATCTATTTGATAGCATTACAGATGTagcaaaaaattatgtaaaatatatgtaacCAGACACCccaacaataattttttttaatatgactgtgctattttgagtaaAAAATAAACTCCAGCTGTCACAAAACCAGCAAGTTACTATAACAGCCAAGAGCAAGGACAAAACAAGGAAATTACAACTAGAGAACTGGAGATGGGAACACCAGTATAAGAAAGTTGAGCCCGATgtacttcattttattttgatttccaTCAAAATAACAAAGAATTTCAAGtaatatgatttttatttctACAAGtctgtttaaagggcacctatgatgaaaatcatcttttgtaagcttttTAGGCCGAACTGTGTGGAGGTATAgcgtgtccacagtcatactggagtaatagaaacacaataagtatCCTTTTTTTACaattcctgacattaaaataggatccaaatcccttccattttgaggcccaccacaatgtgacgtaggagtgcggtttctcTGCCCACCATACTGATTGACCGCCGTGTATTAACATGTATCCGTAGTAACATGTATAATTGTATCAACAAGGCAGGACGTGCACAATGCAACTCTGATTAAAAGACCttttcagctctctgtgatcatcaatcgatcaagaatgagttttacaagtttaaaactttttttaaacagtgcattttactctttatcaccacagccacatgccATTACAatcaaatcaggtttattttgtacattaacataatagaAGTCCATAGAGCAGTGTATATTCATGTGTATCATGTCACtgttgccatgcaaaaacagtgcaaaggtaAAAGTGCACGCtatgtgtgtgaactttgtaatgacattgtgtgtttgtcatcgttgcagaaaggcttgaattaactccacaacaaatacatcaaataatcattgggaaag

Function

GO:

id name namespace
GO:0017121 plasma membrane phospholipid scrambling biological_process
GO:0005886 plasma membrane cellular_component
GO:0017128 phospholipid scramblase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2517 Predicted to enable phospholipid scramblase activity. Predicted to be involved in plasma membrane phospholipid scrambling. Predicted to be active in plasma membrane. Is expressed in several structures, including blastomere; ectoderm; epidermis; intermediate cell mass of mesoderm; and nervous system. Orthologous to several human genes including PLSCR2 (phospholipid scramblase 2) and PLSCR3 (phospholipid scramblase 3).

Ensembl:

ensembl_id ENSDART00000188934

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067656 lncRNA downstream 1052 26576196 ~ 26579449 (-) True XLOC_034766
TCONS_00069220 lncRNA downstream 14285 26555150 ~ 26566216 (-) True XLOC_034765
TCONS_00067652 lncRNA downstream 62442 26514848 ~ 26518059 (-) True XLOC_034763
TCONS_00067651 lncRNA downstream 65179 26514319 ~ 26515322 (-) False XLOC_034763
TCONS_00069219 lncRNA downstream 66440 26511868 ~ 26514061 (-) False XLOC_034763
TCONS_00069221 lncRNA upstream 380796 26982103 ~ 26983922 (-) True XLOC_034772
TCONS_00069222 lncRNA upstream 383638 26984945 ~ 26995403 (-) True XLOC_034773
TCONS_00069223 lncRNA upstream 1777717 28379024 ~ 28388028 (-) True XLOC_034781
TCONS_00069224 lncRNA upstream 1823574 28424881 ~ 28463403 (-) True XLOC_034783
TCONS_00067683 lncRNA upstream 1864986 28466293 ~ 28470599 (-) False XLOC_034784
TCONS_00067654 mRNA downstream 1036 26567864 ~ 26579465 (-) False XLOC_034766
TCONS_00067655 mRNA downstream 8507 26567986 ~ 26571994 (-) False XLOC_034766
TCONS_00067653 mRNA downstream 48412 26518843 ~ 26532089 (-) True XLOC_034764
TCONS_00067647 mRNA downstream 62415 26510827 ~ 26518086 (-) False XLOC_034763
TCONS_00067646 mRNA downstream 82554 26494583 ~ 26497947 (-) True XLOC_034762
TCONS_00067659 mRNA upstream 14934 26616241 ~ 26627252 (-) False XLOC_034768
TCONS_00067660 mRNA upstream 14935 26616242 ~ 26627253 (-) True XLOC_034768
TCONS_00067661 mRNA upstream 79561 26680868 ~ 26721281 (-) True XLOC_034769
TCONS_00067662 mRNA upstream 239829 26841136 ~ 26844064 (-) True XLOC_034770
TCONS_00067663 mRNA upstream 292381 26893688 ~ 26924903 (-) True XLOC_034771
TCONS_00067650 other downstream 66541 26513822 ~ 26513960 (-) False XLOC_034763
TCONS_00067641 other downstream 122689 26446020 ~ 26457812 (-) False XLOC_034760
TCONS_00067631 other downstream 275625 26300795 ~ 26304876 (-) False XLOC_034753
TCONS_00067608 other downstream 789146 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067607 other downstream 817203 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067676 other upstream 1556247 28157554 ~ 28157668 (-) True XLOC_034779
TCONS_00067677 other upstream 1678864 28280171 ~ 28280285 (-) True XLOC_034780
TCONS_00067689 other upstream 1977142 28578449 ~ 28578565 (-) True XLOC_034787
TCONS_00067695 other upstream 2108624 28709931 ~ 28717559 (-) True XLOC_034791
TCONS_00067699 other upstream 2554088 29155395 ~ 29155511 (-) True XLOC_034795

Expression Profile

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