RNA id: XM_039817981.1


Basic Information

Item Value
RNA id XM_039817981.1
length 2279
RNA type mRNA
GC content 0.51
exon number 8
gene id tfg
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22332905 ~ 22350059 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGCCACGTACTGGTTGACGTTGACAGTCTTGGAGGACACTTCCTGATGCTGGCACCCGGGTCTAGCCGCTAAGCTAGCTAACAGATTTTATTTTCACGGTTTGGGAAAACCTGTGAAACTGCGTGGTCAAGTCGTCTGATTGAGTGGTGGGAGCAGAAGAGGTCGGACGGCACCATGAACGGCCAGCTGGACCTGAGTGGGAAGCTGATCATCAAAGCCCAATTGGGCGATGACATCAGACGCATCCCGATTCATAACGAAGACATTACTTATGACGAGCTAGTGCTAATGATGCAGCGTGTCTTCAGGGGAAAGCTGCAGAGTAATGACGAGGTTGCCATCAAATACAAGGATGAAGATGATGATCTCATCACCATCTTTGACAGCTCTGACCTCTCCTTCGCCATCCAGTGCAGTAGAATACTCAAACTGACTTTGTTTGTGAATGGTCAGCCACGGCCTTTGGAGTCTAGTCAGGTGAAGTACCTGCGCAGGGAGCTCATTGAGCTCAGGAATAAAGTCAACAACCTCCTGGATAGCTTGGAGCCCCCCACAGAGCCTGGTCTGGCTGCTACAGCACCGTACAGTGAAGCAGTGGATGGACGTGAAGGCAAAGTTTTGGCAGCAGACCACACAGTGAAACATGCCACTCCAGTCAGTGCAGCCAGCATGTCAGCCTTCGACCCATTAAAAAACCAGGATGAGGTCAGCAAGAATGTCATCTCCGCTTTTGGCCTGAGCGAGGACCAGGCCCCAGCTCCCCCAGCGGTTGCACCAGAGGAGCGCTCAGGAACCCCTGACAGCATTGCCTCCTCCTCGTCTGCAGCCCCTCAGCCAGTGGTGCCCCCCCAACCACAGGCTCCCTATGCAGGAGTACAACAGGGACCCCCAGCTGGCATGGATGGTCAGGTTTATCAGCAGTACCAGGCTCCAGGTGGATACCCGCCTCAGCAACCAGGTGCCCcacctcagcagcagcagcagtacaaTATGCAATACTCTGGATACAGCACTCAGCCCGGTGCCCCTCAGCCTGGCCCACCacagccacagcagcagcagtttcagAACTACGCGCCTCCCTCCTCCCAGGCTCCAGCCTCCGGTCCAGCTCCGGCTCCAGCTCCGGGTTTCCAGGGTGGCCAGCAGCAGCCCCATCCAACTCAGGGAGCCCAGCAGTATCAAGGAGCCTTCCCTCCCCAAAACTATACATCCCAGGCCACCCAGCCTGCCAACTACAGCCTGCCGCCCAGCTCCCAGCCCGGCTCAGCGTACCAACCCCGCCCAGGATACACCCCGCCTCCAGGCAACACTGTCACCCCTCCACCAGGATCTGCTAACCCGTACGCTCGCAACCGCCCCCCTTACGGCCAGGGCTATACTCAGCCAGGCCCTGGGTATCGGTAAAAAAGGATAGCGGATGTTACTAATCCTTACACACATCCCAAACCCTTCCCCTGTGGGGCTCCAACTGTTTGGAGTGTGTGCAGTAAACATGGTTTACTGCtctgcacccccccccccccccccccctcccgtaCAAATATCAAGTCCAAATATGAAACAAGCAACCCCACCCGTCTGATGGTTATTGTTTGTATGCTGTCTCTTCAACACACCACTCTACTCTGGCCCTGGTGTATGTTCCTTGTGTTGTTTTCCCCTCTTCTCCTGTCACATCACCAATGTCTGCTCTGCCCTCTTGTATCCATAAACATGTAACCGGTCTGTATGCACACACCTGGGTAACCAAAACAGGCTGTTGCACAAACAGTTTATTGTTCTTTTCATGGTAACGCTTCATTTTGCAAGTGAGGTCAGCATCCGTATTCTGCGTTTGTGTCTTACATGTCAATGACCGAGATCTCAACCGCTTGTGTTGAGTTAACTATGTATAGATGCATTTATAAGACGCTATCTAAATGAAAAGTTACCcgttttttgtcatttgttttgtcttctttgtttagttttttttttgattttatcaATTTCACCACCATGTCGGTATTAATGATGTGTCAATGAAACTGCCCCATGTTGGGAACACTAGCTAAGTGATGGCTTATGGGAGAAGTAGATCCCAGCGTCATAAATAAAGCTTCTTTTGTTTAGCTAATTATATCATCTCCAGTAAAGCTTGgtattcctctctttctctttatctTATCACTGGTTTTTACTAATAAATCAAATTCCACCCTCAAGTGAGATTAGTTGTTTATGTATAAACtgtaacactttttttcttgaaCCTAATAAATGATTGAGACCCAG

Function

GO: NA

KEGG:

id description
K09292 TFG; protein TFG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169454 lncRNA upstream 850880 21479929 ~ 21482025 (+) False G126000
TU169455 lncRNA upstream 850880 21479929 ~ 21482025 (+) True G126000
TU169447 lncRNA upstream 856155 21473163 ~ 21476750 (+) False G125994
TU169446 lncRNA upstream 857212 21473163 ~ 21475693 (+) True G125994
TU169444 lncRNA upstream 864773 21465910 ~ 21468132 (+) True G125992
TU169684 lncRNA downstream 968 22351027 ~ 22352358 (+) True G126160
TU169686 lncRNA downstream 6035 22356094 ~ 22357669 (+) True G126162
TU169695 lncRNA downstream 35470 22385529 ~ 22385754 (+) True G126169
TU169701 lncRNA downstream 95269 22445328 ~ 22446121 (+) True G126175
TU169782 lncRNA downstream 185072 22535131 ~ 22537513 (+) True G126246
XM_039817980.1 mRNA upstream 104 22330500 ~ 22332801 (+) True jagn1a
XM_039817979.1 mRNA upstream 3273 22316100 ~ 22329632 (+) True col8a1a
XM_039817741.1 mRNA upstream 60282 22268840 ~ 22272623 (+) True tmem30c
XM_039817744.1 mRNA upstream 64457 22227032 ~ 22268448 (+) True cmss1
XM_039817880.1 mRNA downstream 318247 22668306 ~ 22730423 (+) True mycbp2
XM_039817885.1 mRNA downstream 318247 22668306 ~ 22730423 (+) False mycbp2
XM_039817890.1 mRNA downstream 318247 22668306 ~ 22730423 (+) False mycbp2
XM_039817892.1 mRNA downstream 318247 22668306 ~ 22730423 (+) False mycbp2
XM_039817886.1 mRNA downstream 318247 22668306 ~ 22730423 (+) False mycbp2
XR_005641000.1 other upstream 644103 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 705453 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 1467463 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 1473995 20853089 ~ 20858910 (+) True mpc2b
TU168970 other upstream 1811631 20492178 ~ 20521274 (+) False G125627
TU169945 other downstream 457134 22807193 ~ 22815102 (+) True G126363
XR_005641105.1 other downstream 2517262 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 3280048 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 3289747 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 3766929 26116988 ~ 26129879 (+) True G127165

Expression Profile