RNA id: XM_039817744.1


Basic Information

Item Value
RNA id XM_039817744.1
length 1174
RNA type mRNA
GC content 0.47
exon number 10
gene id cmss1
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22227032 ~ 22268448 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGTGCTGCTTTTGAACACACCCCTAGCATGCTCTCTCAGCGGTAGATTTGGATTGGACAGACTTCTAGCTTGAGGAAAATGGGAGACGACTTGGGTGACGAGTGGTGGACGCACGAGGGTAATTCAGgtgcgtctgaggcagaggaggagacacAACTAGAGAAGcagccaacaaaaaaaacaaacgcaaAGACAAAaccagagaagaggaagagtgtAACAGAGAAAACTGTTAAGGCCAAGAAAACGAAAAAGAATGAACAGAAAGAGTGTATTATTCCTCAGAAGAAACAGACTGAGGATGAAAAGTCAACAAAAcccaaaagaaagagaaagAAGACTATTACAGATGTCTTGTCCTCGTCGGAGCCAAAACCAGGCTGCCCGGCCAACCTGCAGAGCCTGGTTACCCAGTACTTCTCAGACAAGCGCTCTGTGATCGAGCAGGAGGAGCTCAAATTGCTTGACTCCTGCTTTCTGTCCAGTAATGACTTGACGCACACCCTCTCCTCATATCTGAAACAGGtTTGTCCCAAGTGGTCGAAAATTCAAAAGCAGCACACAGAAAAGAGTTCCGTGGTCCTGCTCATCGTCTGCAGCTCCGCTCTCCGAACCATTGAGCTCATCAAGCAACTGACAGCCTTCAAGGGTGAAGCCAAAGCATTAAAACTTTTTGCGAAACACATCAAGATAGAGGAGCAGGTGAAACTGCTGCAAAAGGGCGTCACCCACATCGGAGTCGGGACACCTGGCAGGATCAGCGCTCTTATAGAGAAAGAGGGTTTGGGCTTGCAGGCGTTGAGGTACGTGGTTCTGGACTGGAACTGGAGGGACCAGAAGCTCCGAAGGATGGTGGATGTTCCTGAGGTCAAACTGGACTTTATGAAGCTGCTGGAGAGTGGTATCCTGAATGGTTGTAAAGAAGACAAAATCAAAATTGGACTATTTTAACTGCACATTGCTGTGGGCTGATAATCCACATGACACCTTGATGTTCCTCACTACATGCTGAGGGGCCTCATcctgtttgtttttcctttgtGTCAGTGGGAAATTTGTGCTGTGCGTTTACTATTTTCAGAGGCCGTGTCAAGTGTACGGTGTTGTTTGTTCGCTGTTGTCCATCGCGATGTCCCACTGTAATGGCTTGAATAAACGGACTTGGAATGAAA

Function

GO: NA

KEGG:

id description
K14784 CMS1; protein CMS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169454 lncRNA upstream 745007 21479929 ~ 21482025 (+) False G126000
TU169455 lncRNA upstream 745007 21479929 ~ 21482025 (+) True G126000
TU169447 lncRNA upstream 750282 21473163 ~ 21476750 (+) False G125994
TU169446 lncRNA upstream 751339 21473163 ~ 21475693 (+) True G125994
TU169444 lncRNA upstream 758900 21465910 ~ 21468132 (+) True G125992
TU169684 lncRNA downstream 82579 22351027 ~ 22352358 (+) True G126160
TU169686 lncRNA downstream 87646 22356094 ~ 22357669 (+) True G126162
TU169695 lncRNA downstream 117081 22385529 ~ 22385754 (+) True G126169
TU169701 lncRNA downstream 176880 22445328 ~ 22446121 (+) True G126175
TU169782 lncRNA downstream 266683 22535131 ~ 22537513 (+) True G126246
XM_039818510.1 mRNA upstream 341604 21883581 ~ 21885428 (+) True nr0b1
XM_039818329.1 mRNA upstream 364007 21861260 ~ 21863025 (+) True LOC120570102
XM_039818638.1 mRNA upstream 372531 21848651 ~ 21854501 (+) False rnaseh2b
XM_039818636.1 mRNA upstream 372531 21848654 ~ 21854501 (+) True rnaseh2b
XM_039817249.1 mRNA upstream 421570 21800165 ~ 21805462 (+) True trim13
XM_039817741.1 mRNA downstream 392 22268840 ~ 22272623 (+) True tmem30c
XM_039817979.1 mRNA downstream 47652 22316100 ~ 22329632 (+) True col8a1a
XM_039817980.1 mRNA downstream 62052 22330500 ~ 22332801 (+) True jagn1a
XM_039817981.1 mRNA downstream 64457 22332905 ~ 22350059 (+) True tfg
XM_039817983.1 mRNA downstream 64457 22332905 ~ 22350059 (+) False tfg
XR_005641000.1 other upstream 538230 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 599580 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 1361590 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 1368122 20853089 ~ 20858910 (+) True mpc2b
TU168970 other upstream 1705758 20492178 ~ 20521274 (+) False G125627
TU169945 other downstream 538745 22807193 ~ 22815102 (+) True G126363
XR_005641105.1 other downstream 2598873 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 3361659 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 3371358 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 3848540 26116988 ~ 26129879 (+) True G127165

Expression Profile