RNA id: XM_039818636.1


Basic Information

Item Value
RNA id XM_039818636.1
length 1355
RNA type mRNA
GC content 0.44
exon number 11
gene id rnaseh2b
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 21848651 ~ 21854501 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCAAGGAAAGTTCCACTGCATAAACAAAAACAGGGTGAATTAAAAGTCTAAAACGCGAACTTTTTCGGTTAATTGGGAGCTTGTTTCGACGCCGGAATATTTAATTGCTTTTAAAAACGTGTTTGGTAATGCTTGTTTTacaaaaagataaagaaaatgaGACGACGGCTTGTTTTCTCCTGTGAGACGAACGCAGCAGAAactgcacagagagagaggcgcCTTTTCTGAGCTCATGTTGTCAGGCAAAAAGTAGTAGCCGTCACGTTCAGTAGGCCGACACTGTTTTTAGCCCAAATAAGCATTCATTTCAGATCAGTATCAAACCACGTTAACATATATCCATTCCGTTAAGCTGAATACAACATGGCTACTAAAAAGAAGCAAACGCCCAATTTACAAAATGATAGTTGGGTTGTCATTGCTGCAGACTCTGTCATCGACACACAGAAGAACGACAGTGACCCAGCTTTTGTGAGACTGAGGAATCCCTCAACAGATGCAGCATCTCTGTATATGCTGAGTAGTGGTGATGTACAGCTGTTTGAGGTCAAAGCATTTGAAGAGGATTTCCACTCCTGGTTTGTTGGCCAAACTGTACAGAGAGatggAAGACTTCTCTTTGTAACACCAATGGATCCTCTCTATCTCATTTTGCCCTATTTGATGAAATCTGACAAAGAGGGGAAGTTCCAGCCTGTGGATCAAGTTGTGATGGATGAGGAATTCCCAGCTTGCTCAAAGCTGCTGAGCTGCACACGTTCCCTAGCCTTCCTGCACCACATTGCCGAGGAAAAAGAGGTGGGAAAACTGAAGTTCCATCGATACAATCAAGAGAAGACAATGAATTGGTTGAAGAAAAAGGTGGAGAGGACAGTCACTACGCTCAAGGCAAGAAGTATCTCTGTGGGAGAAGGAGTCAAATCCATAACATACATCAGGGTAAAGTCAGAGTCGGACTACCATGAGGAGGACTACCTACGCTATGCTCATGGCCTGATATCCCAGTACCTCAGTGAAGACCTGAGCAAAGCCCTGCTCGACCACTTGCAGTTACCAGAGCTCACAAGCCCAAAGGAGACGGAACCTCCTTCCAAGAAGCGGAAACTTTCAGACAAACCGGTGGAGGCCGGGGAGGACTACACCAAATTCAACAGTGCAGACTTTGTGCGGAAACCGTCCAAGAAGATGACTGCAGCTCAGAAATCGCTGGCTAAGGTGGACAAGACTGGCATGAAGACTATGTCCTCCTTCTTCAGCCCCAAGGCCAAAGCAGAAAAGAAATGAATGTTGTATAGTTTGTGGTTTTGTATATGAAACATTTGtaataaagaaaatgtatttgacaaatga

Function

GO: NA

KEGG:

id description
K10744 RNASEH2B; ribonuclease H2 subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169454 lncRNA upstream 366629 21479929 ~ 21482025 (+) False G126000
TU169455 lncRNA upstream 366629 21479929 ~ 21482025 (+) True G126000
TU169447 lncRNA upstream 371904 21473163 ~ 21476750 (+) False G125994
TU169446 lncRNA upstream 372961 21473163 ~ 21475693 (+) True G125994
TU169444 lncRNA upstream 380522 21465910 ~ 21468132 (+) True G125992
TU169684 lncRNA downstream 496526 22351027 ~ 22352358 (+) True G126160
TU169686 lncRNA downstream 501593 22356094 ~ 22357669 (+) True G126162
TU169695 lncRNA downstream 531028 22385529 ~ 22385754 (+) True G126169
TU169701 lncRNA downstream 590827 22445328 ~ 22446121 (+) True G126175
TU169782 lncRNA downstream 680630 22535131 ~ 22537513 (+) True G126246
XM_039817253.1 mRNA upstream 38742 21800163 ~ 21809912 (+) False trim13
XM_039817252.1 mRNA upstream 43192 21800162 ~ 21805462 (+) False trim13
XM_039817249.1 mRNA upstream 43192 21800165 ~ 21805462 (+) True trim13
XM_039817251.1 mRNA upstream 46083 21793274 ~ 21802571 (+) False trim13
XM_039817250.1 mRNA upstream 46083 21800412 ~ 21802571 (+) False trim13
XM_039818329.1 mRNA downstream 6759 21861260 ~ 21863025 (+) True LOC120570102
XM_039818510.1 mRNA downstream 29080 21883581 ~ 21885428 (+) True nr0b1
XM_039817744.1 mRNA downstream 372531 22227032 ~ 22268448 (+) True cmss1
XM_039817743.1 mRNA downstream 372534 22227035 ~ 22268448 (+) False cmss1
XM_039817745.1 mRNA downstream 372535 22227036 ~ 22268448 (+) False cmss1
XR_005641000.1 other upstream 159852 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 221202 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 983212 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 989744 20853089 ~ 20858910 (+) True mpc2b
TU168970 other upstream 1327380 20492178 ~ 20521274 (+) False G125627
TU169945 other downstream 952692 22807193 ~ 22815102 (+) True G126363
XR_005641105.1 other downstream 3012820 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 3775606 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 3785305 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 4262487 26116988 ~ 26129879 (+) True G127165

Expression Profile