RNA id: TU186411


Basic Information

Item Value
RNA id TU186411
length 278
lncRNA type read_through
GC content 0.47
exon number 3
gene id G138366
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 33894930 ~ 33909412 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCAGACACTGAGAGGCATCCTCCAGCTGTCCAAAGGAAGACTTTCAGGGCTGCAGCACTCTGTCTGGCAGTGCTCTGCTTTCTGATGATGACTGGAATCATCCTCTTATCTGTATACTTCACTTTGCTGCAGACCAGATACGACCAACTGAGCAACAACAACACTCAGTTACAGGAGGAAGTAAAGCAGCTGAAGAACAGAACTGAAGTCACTTTGCTGCAGACCAGATACGACCAACTGAGCAACAACAACAGTCAGTTACAGGATGAAGTAAAG

Function

GO: NA

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186402 lncRNA upstream 30994 33860772 ~ 33863936 (+) True G138359
TU186330 lncRNA upstream 148618 33712416 ~ 33746312 (+) True G138323
TU186334 lncRNA upstream 190570 33600507 ~ 33704360 (+) False G138323
TU186344 lncRNA upstream 332574 33532254 ~ 33562356 (+) True G138324
TU186265 lncRNA upstream 485064 33409229 ~ 33409866 (+) False G138303
TU186417 lncRNA downstream 213 33909625 ~ 33913748 (+) False LOC120572044
XR_005641351.1 lncRNA downstream 13250 33922662 ~ 33924563 (+) True LOC120572088
XR_005641352.1 lncRNA downstream 51843 33961255 ~ 33965336 (+) True LOC120572089
TU186425 lncRNA downstream 61606 33971018 ~ 33979179 (+) True G138375
TU186564 lncRNA downstream 241186 34150598 ~ 34150826 (+) True G138444
XM_039821244.1 mRNA upstream 7033 33876644 ~ 33887897 (+) True LOC120572043
XM_039821245.1 mRNA upstream 7033 33876644 ~ 33887897 (+) False LOC120572043
XM_039821259.1 mRNA upstream 24525 33861217 ~ 33870405 (+) False LOC120572054
XM_039821240.1 mRNA upstream 44002 33825830 ~ 33850928 (+) True LOC120572041
XM_039821246.1 mRNA downstream 21474 33930886 ~ 33946962 (+) False LOC120572044
XM_039819637.1 mRNA downstream 117256 34026668 ~ 34110018 (+) True LOC120570950
XM_039821257.1 mRNA downstream 132415 34041827 ~ 34049150 (+) True LOC120572052
XM_039821255.1 mRNA downstream 176631 34086043 ~ 34094245 (+) True LOC120572050
XM_039819638.1 mRNA downstream 202683 34112095 ~ 34124992 (+) True LOC120570951
TU186403 other upstream 21636 33861199 ~ 33873294 (+) True LOC120572054
unassigned_transcript_654 other upstream 117454 33774507 ~ 33777476 (+) True LOC120572071
TU186376 other upstream 138844 33755237 ~ 33756086 (+) False LOC120572047
unassigned_transcript_652 other upstream 145575 33748791 ~ 33749355 (+) False LOC120572057
TU186349 other upstream 145646 33748700 ~ 33749284 (+) True LOC120572057
TU186295 other downstream 60366 33969778 ~ 33972424 (+) False G138322
TU186310 other downstream 60366 33969778 ~ 33998689 (+) True G138322
unassigned_transcript_656 other downstream 68097 33977509 ~ 33979950 (+) True LOC120570947
TU186299 other downstream 68144 33977556 ~ 33979866 (+) False G138322
unassigned_transcript_658 other downstream 77367 33986779 ~ 33998600 (+) True LOC120570948

Expression Profile