RNA id: unassigned_transcript_654


Basic Information

Item Value
RNA id unassigned_transcript_654
length 680
RNA type V_gene_segment
GC content 0.42
exon number 3
gene id LOC120572071
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 33774507 ~ 33777476 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcatctggactctcctctgctgctgcttcacagCCGTTAAGAGGCCAGTGTTGATCAGTGGCTGTCCAGGCCTTTCAGAGACACTGGTACACCGGCAGCACAATGATGATGTCACTGACTCTACTGCTGGCCACACTGGGGCTCCTTGTTCAGGtttCATCAGGACAAATCATCCTGACTCAGTCTCCTGGATCTCAGTCTGTTGTTCCAGGACAGACTGTCTACATCACATGTAAAACCAGTTCAAAGTCTGGTAGCTACATCCACTGGTACCTTCAGAAATCTGGAGAAACTCCTAAACTCCTGATTTATGCAGCTACAAGCCGTCAGTCTGATGTTTCTGATCGTTTTATTGGATTTGGATCTGAGCCTAATTTCATTCTGACCATCAGAGGATTTCAGTCTGAAGATTCAGGACTTTACTACTGTCAGCAGAGTAACAGCCGGCCAATCACACAGTGATACAATGatgtacaaaaacctccctcagcTGGAGAGGAACAAATCTGACTCAACAGCTGCActgaaactaaaacaacaaaagcttgactaaactaaaatatatttcataatAATTGACTTTCAACATTGTAACACTAAATATACTTTATCTAACTAGAAGTTGTACTGTAaagtatttaaataaaacagGGCTTAAAACATTCTGCTGCACATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186330 lncRNA upstream 28195 33712416 ~ 33746312 (+) True G138323
TU186334 lncRNA upstream 70147 33600507 ~ 33704360 (+) False G138323
TU186344 lncRNA upstream 212151 33532254 ~ 33562356 (+) True G138324
TU186264 lncRNA upstream 364641 33408746 ~ 33409866 (+) False G138303
TU186402 lncRNA downstream 83296 33860772 ~ 33863936 (+) True G138359
TU186409 lncRNA downstream 107033 33884509 ~ 33911625 (+) True G138364
TU186411 lncRNA downstream 117454 33894930 ~ 33909412 (+) True G138366
TU186417 lncRNA downstream 132149 33909625 ~ 33913748 (+) False LOC120572044
XR_005641351.1 lncRNA downstream 145186 33922662 ~ 33924563 (+) True LOC120572088
XM_039821251.1 mRNA upstream 574327 33162376 ~ 33200180 (+) True LOC120572048
XM_039821256.1 mRNA upstream 578964 33191381 ~ 33195543 (+) True LOC120572051
XM_039821253.1 mRNA upstream 591039 33162376 ~ 33183468 (+) False LOC120572048
XM_039821250.1 mRNA upstream 597239 33162376 ~ 33177268 (+) False LOC120572048
XM_039821254.1 mRNA upstream 607150 33162376 ~ 33167357 (+) False LOC120572048
XM_039821239.1 mRNA downstream 33889 33811365 ~ 33819867 (+) True LOC120572040
XM_039821240.1 mRNA downstream 48354 33825830 ~ 33850928 (+) True LOC120572041
XM_039821242.1 mRNA downstream 48354 33825830 ~ 33850928 (+) False LOC120572041
XM_039821241.1 mRNA downstream 48354 33825830 ~ 33850928 (+) False LOC120572041
XM_039821243.1 mRNA downstream 51249 33828725 ~ 33850928 (+) False LOC120572041
TU186376 other upstream 18421 33755237 ~ 33756086 (+) False LOC120572047
unassigned_transcript_652 other upstream 25152 33748791 ~ 33749355 (+) False LOC120572057
TU186349 other upstream 25223 33748700 ~ 33749284 (+) True LOC120572057
unassigned_transcript_650 other upstream 29630 33744166 ~ 33744877 (+) True LOC120572056
unassigned_transcript_649 other upstream 32783 33741219 ~ 33741724 (+) True LOC120572060
TU186403 other downstream 83723 33861199 ~ 33873294 (+) True LOC120572054
TU186295 other downstream 192302 33969778 ~ 33972424 (+) False G138322
TU186310 other downstream 192302 33969778 ~ 33998689 (+) True G138322
unassigned_transcript_656 other downstream 200033 33977509 ~ 33979950 (+) True LOC120570947
TU186299 other downstream 200080 33977556 ~ 33979866 (+) False G138322

Expression Profile