Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039821239.1 |
| length | 2644 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 3 |
| gene id | LOC120572040 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053124.1 |
| NCBI id | CM020921.1 |
| chromosome length | 39224300 |
| location | 33811365 ~ 33819867 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0033554 | cellular response to stress | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0006281 | DNA repair | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU186330 | lncRNA | upstream | 65053 | 33712416 ~ 33746312 (+) | True | G138323 |
| TU186334 | lncRNA | upstream | 107005 | 33600507 ~ 33704360 (+) | False | G138323 |
| TU186344 | lncRNA | upstream | 249009 | 33532254 ~ 33562356 (+) | True | G138324 |
| TU186260 | lncRNA | upstream | 393394 | 33408746 ~ 33417971 (+) | False | G138303 |
| TU186261 | lncRNA | upstream | 401499 | 33408746 ~ 33409866 (+) | False | G138303 |
| TU186402 | lncRNA | downstream | 40905 | 33860772 ~ 33863936 (+) | True | G138359 |
| TU186409 | lncRNA | downstream | 64642 | 33884509 ~ 33911625 (+) | True | G138364 |
| TU186411 | lncRNA | downstream | 75063 | 33894930 ~ 33909412 (+) | True | G138366 |
| TU186417 | lncRNA | downstream | 89758 | 33909625 ~ 33913748 (+) | False | LOC120572044 |
| XR_005641351.1 | lncRNA | downstream | 102795 | 33922662 ~ 33924563 (+) | True | LOC120572088 |
| XM_039821251.1 | mRNA | upstream | 611185 | 33162376 ~ 33200180 (+) | True | LOC120572048 |
| XM_039821256.1 | mRNA | upstream | 615822 | 33191381 ~ 33195543 (+) | True | LOC120572051 |
| XM_039821253.1 | mRNA | upstream | 627897 | 33162376 ~ 33183468 (+) | False | LOC120572048 |
| XM_039821250.1 | mRNA | upstream | 634097 | 33162376 ~ 33177268 (+) | False | LOC120572048 |
| XM_039821254.1 | mRNA | upstream | 644008 | 33162376 ~ 33167357 (+) | False | LOC120572048 |
| XM_039821240.1 | mRNA | downstream | 5963 | 33825830 ~ 33850928 (+) | True | LOC120572041 |
| XM_039821242.1 | mRNA | downstream | 5963 | 33825830 ~ 33850928 (+) | False | LOC120572041 |
| XM_039821241.1 | mRNA | downstream | 5963 | 33825830 ~ 33850928 (+) | False | LOC120572041 |
| XM_039821243.1 | mRNA | downstream | 8858 | 33828725 ~ 33850928 (+) | False | LOC120572041 |
| XM_039821259.1 | mRNA | downstream | 41350 | 33861217 ~ 33870405 (+) | False | LOC120572054 |
| unassigned_transcript_654 | other | upstream | 33889 | 33774507 ~ 33777476 (+) | True | LOC120572071 |
| TU186376 | other | upstream | 55279 | 33755237 ~ 33756086 (+) | False | LOC120572047 |
| unassigned_transcript_652 | other | upstream | 62010 | 33748791 ~ 33749355 (+) | False | LOC120572057 |
| TU186349 | other | upstream | 62081 | 33748700 ~ 33749284 (+) | True | LOC120572057 |
| unassigned_transcript_650 | other | upstream | 66488 | 33744166 ~ 33744877 (+) | True | LOC120572056 |
| TU186403 | other | downstream | 41332 | 33861199 ~ 33873294 (+) | True | LOC120572054 |
| TU186295 | other | downstream | 149911 | 33969778 ~ 33972424 (+) | False | G138322 |
| TU186310 | other | downstream | 149911 | 33969778 ~ 33998689 (+) | True | G138322 |
| unassigned_transcript_656 | other | downstream | 157642 | 33977509 ~ 33979950 (+) | True | LOC120570947 |
| TU186299 | other | downstream | 157689 | 33977556 ~ 33979866 (+) | False | G138322 |
