RNA id: TU191231


Basic Information

Item Value
RNA id TU191231
length 290
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G141778
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7521213 ~ 7521793 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtagctaggtaaggaccactagccagtcagaagcagagtatgagggagtgacctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcatgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggtgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggagtgacctgacagt

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191227 lncRNA downstream 2456 7518509 ~ 7518757 (-) True G141774
TU191226 lncRNA downstream 2746 7518265 ~ 7518467 (-) True G141773
TU191192 lncRNA downstream 58740 7395159 ~ 7462473 (-) True G141741
TU191122 lncRNA downstream 876001 6558298 ~ 6645212 (-) True G141683
TU191127 lncRNA downstream 942458 6577177 ~ 6578755 (-) True G141688
TU191234 lncRNA upstream 37019 7558812 ~ 7559174 (-) True G141781
TU191261 lncRNA upstream 127179 7648972 ~ 7655508 (-) False LOC120572295
TU191424 lncRNA upstream 319128 7840921 ~ 7937490 (-) False LOC120573451
TU191425 lncRNA upstream 322312 7844105 ~ 7846084 (-) True G141912
TU191429 lncRNA upstream 413437 7935230 ~ 7987441 (-) False G141913
XM_039821636.1 mRNA downstream 126135 6725271 ~ 7395078 (-) False nrxn2b
XM_039821550.1 mRNA upstream 127194 7648987 ~ 7703616 (-) True LOC120572295
XM_039821548.1 mRNA upstream 143790 7665583 ~ 7703618 (-) False LOC120572295
XM_039821546.1 mRNA upstream 143790 7665583 ~ 7703618 (-) False LOC120572295
XM_039821545.1 mRNA upstream 143791 7665584 ~ 7703617 (-) False LOC120572295
XM_039821544.1 mRNA upstream 143792 7665585 ~ 7701187 (-) False LOC120572295
TU191048 other downstream 1150120 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 1150120 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 1184454 6336621 ~ 6336759 (-) True LOC120573735
XR_005641774.1 other downstream 1185581 6335494 ~ 6335632 (-) True LOC120573734
XR_005641401.1 other downstream 1294407 6221971 ~ 6226806 (-) False LOC120572220
TU191399 other upstream 260151 7781944 ~ 7787595 (-) False fcer1g
unassigned_transcript_685 other upstream 315428 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191428 other upstream 461144 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 585854 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 585854 8107647 ~ 8111920 (-) False LOC120572400

Expression Profile