RNA id: XM_039821636.1


Basic Information

Item Value
RNA id XM_039821636.1
length 7288
RNA type mRNA
GC content 0.55
exon number 20
gene id nrxn2b
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6725271 ~ 7395078 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgcccccaagCTTTTGTCGACAGCTCAAATTTCCTGGAAATTGCACTGAGATCTGGATTCAAGAGAAAATTTCTATTTTCGGTCCAGGATAGACCAAGAGGCTTTTGAAGAAAGGGCTGTGTTGAAAAATcatattccccccccccccaccccctctttTACTCTCCCACTATTCCTCATTCCTTTTCTCCAGTTCCCAGAGGCACCAACTGATGGAGAGACAAAGGAGAGAGTCAGGATAAGGACAAAAATTAGAAATttggagagaagaggaaaaaactgTCAAGTCAAGAAAATTGTAGTAGGACCCCTGTGAGGATTACTTTACCCAGTTGATCTTGATATCCCAGTTCAGTGATATATAATGCTCattgtttacatttgaaatCTGTTCGCCAGAGCGACGTTAGGCGTTACCTCTGGGGTGCGTTAGACCATAAAGGCATCAAGTAGAGAAGGGGAAACTTGGGAACTTTGAGCATGACAAGGGGGTTAAGATTCTTCTGTTGGCCCCTGTGGCCTGTGGCCTTCTTCAGCCTGCTCACTACGGTGAAGATGCTGGAATTTGGTGGGGCGCCTGGCCAGTGGGCGCGCTACGGACGCTGGGAAGCTGGATCAGTGGGCGAGCTGAGCTTCAGTCTCAAGACCAACATCAGCAAAGCCTTGGTACTCTATCTGGACGACGGCGGCAACTGTGACTTCTTGGAGCTCCTCATCGCTGGTGGGCGCCTCCAGCTGCGCTTTGCCATCCACTGTGCCGAGCCGGCCACAGTGCACATGGAGACACGGGTGAATGACGACCGCTGGCACATGGTCTTGCTCACCCGCAATTTCCGTGAGACCCTCCTGATGGTCGACGGTGAGACAAAAGTGGCTGAAGTCAAGTCCAAGAGGAAGGAGATGGCAGTGGTCAGTGACCTGTTTGTGGGCGGCATCCCACCTGATGTGCGCCTCTCTGCGCTGACGTCGAGCACCGTGAAGTACGAGCCACCCTTCCAGGGCTTGATTTCCAATCTGAAGGTCGGGGAGATGCCTCCTACTTTGTTAAATAGCCAGGGCATTCAGAGCGACCTGGAGTACCTCTGCACCAAACAGAACCCGTGCTTCAATGGAGGGTTTTGCTCTATTCAGTATGGAGAAGTTCACTGTGACTGCACCCTCACCCGCTTCAAGGGGAAGTACTGCAAAGAAGCTGAAGAGTATGCTGCCGAAGGTCTGGCGCACCTGACGTTAAACGACCAAGGCAAGGAAGAGTCGGTAGCCACCTTCAAGGGCAACGAGTTCTTCTGCTACGACCTGTCGCTGACGCCCATCCAGAGCAGCACCGACGAGATCACGCTTTCCTTCCGCACGCTGCAACGCAACGGCCTCATGCTGCACACCGGCAAGTCGGCAGACTACGTGAACCTTTCCCTGAAGAGCGGCGCGGTTTGGCTGGTCATCAACCTGGGCTCGGGGGCATTTGAGGCCCTGGTGGAGCCCGTCAACGGCAAGTTCAACGACAACGCCTGGCATGACGTGCGCGTCACCCGCAACCTGCGCCAGCACGCAGGCATTGGACACGCTATGGTGACCATCTCAGTGGATGGTATATTGACCACCACTGGTTACACCCAGGAAGATTACACCATGTTGGGTTCAGATGACTTCTTCTACATTGGAGGGAGCCCGAACACCGCCGACCTGCCCGGATCACCAGTCAGCAACAACTTCATGGGCTGCCTTAAAGatGTGGTGTACAAGAACAACGACTTCAAGCTGGAGCTGTCGCGGCTGGCCATCGAGCGCGACCCTAAAATCACCCTGAATGGTGACTTGGTGTTTCGCTGCGAGGACGTGGCGGCCCTGGACCCCGTCACCTTTGAGACCCCCGAGTCCTACATCTCCCTGCCCAAGTGGAACACCAAGAAGACGGGATCTATCTCCTTCGACTTCCGCACTACGGAGCCCAGTGGGCTCCTGCTGTTCAGCCACGGCCGTCCTCAGGgtccaaaaagaaaaaggttgggaagaattttttggggggggggggggttttttctCATcaaaaagggggggagggataTGGGATCTGGGAAAACAAAGCTGAAGGCCAGCAACAAGAAGGTCAATGATGGGGAATGGTGCCATGTGGATTTCCAGAGGGAAGGGAGGAAAGGATCTATCTCAGTTAACAGCCGCAGCATGCCCTTCAGCTCCCCAGAGGGCAGTGAAATCCTGGACCTGGACAGTGATATGTACCTAGGCGGGCTGCCCGAGTCTAAGTCGGACCTCATCCTGCCGCCAGAGGTGTGGACGGCGCTGCTTAACTACGGCTACGTGGGCTGCGTCCGCGACCTCTTCATTGATGGCAAGAGCCGCGATGTCCGGCGCCTGGCTGAGATCCAGAGCGCGTTCGGTGTCAGCAGCTTCTGCACCCGGGAGCTGCAGAAGAGGTGCAGCAGCACCCCCTGTGGCAACGCAGGTCTATGCAAAGAGGGCTGGAACCGCTACATATGCGATTGCATCGGCACCGGATACCTGGGTACCAACTGTGAGATAGAGGCGACGGTGCTGAGTTACGACGGCAGCATGTACCTGAAGATCATCATGCCGGTCACCATGCACACGGAGGCCGAGGACGTGGCGCTGCGCTTCATGTCCCAGCGGGCGTATGGCCTGCTCATGGCCACCACCTCCAAGGAGTCGGCGGACACCCTGCGACTGGAGCTGGACGGAGGCCGCGTCAAGCTCACCGTGAACCTCGGCAAAGGACCTGAGACGCTGTTCGCGGGGCAGAAGCTGAACGACAACGAGTGGCACATGGTGAAGGTGGTGCGACGAGGCAAGAGCCTGCAGCTGTCTGTGGATAATGTCACAGTGGAAGGCCAGATGACTGGTGCCCACACACGTCTCGAGTTCCACAACATCGAGACGGGCATCATGACCGAGCGACGCTTCATATCTGTGGTGCCCTCACACTTCATTGGCCACCTCCAGGGCCTGACCTTCAACGGGGTGCCCTACCTAGACCAGTGCAAAAATGGGGACATCTCCTACTGCGAACTGAACGCCCGCTTTGGCATGCGTCACATCATTGCAGATCCGGTGACATTTCGAACGAAAGGAAGCTACTTAGCGCTAGCCACTTTGCAAGCTTACGCCTCCATGCACCTCTTCTTTCAGTTTAAAACCACCACGCCGGACGGCCTGATGCTCTTCAACTCTGGAGACGGGAGTGACTTTATTGTCGTGGAACTGGTGAAGGGATACGTCCACTACGTCTTCGATCTCGGCAACGGGCCGTCGCTGATGAAGGGCAACTCGGACAAGCCCCTCAATGACAACCAGTGGCACAACGTGGTGGTGTCCCGGGACGCCAACAACGTACACACACTCAAGATCGACTCACGCACCGTTACGCAGCACTCCAATGGAGCCCGCAACCTGGACCTCAAAGGGGAGCTGTACATCGGTGGCGTGACAAAGAACATGTACAGCAATTTGCCCAAGCTGATTGCATCCCGGGACGGGTACCAGGGCTGCCTGGCCTCCGTGGACCTGAACGGGAGACTCCCCGACCTGATCGCAGATGCCCTCCACAGGGTGGGCCAGGTGGAACGAGGCTGCGATGGACCCAGTACCACCTGTACGGAGGAGTCTTGCTACCATCAGGGGGTGTGTCTCCAGCAGTGGGAGGGCTTCACCTGCGACTGCACCATGACGTCCTATGGAGGTTCATTTTGCAACGATCCTGGGACAACTTACATCTTCGGGAGAGGCGGAGCCCTCATCACATACACCTGGCCACCCAATGACCGGCCGAGCACGCGGGCAGACCGGCTGGCAGTGGGCTTTAGCACGCAGCTGAAGGAGGCCATTCTGGTCAGGGTGGAGAGTGCCAAAGGACTGGGAGATTACCTGGAGCTGCACATAGAGCGGGGAAAGATCGGCGTGATCTTCAACGTGGGAACGGACGACATAATCATCGAGGAGAGCGCGGTGATGGTGAGCGACGGCAAGTACCACGTGGTGCGATTCACACGGAGCGGCGGCAACGCCACGCTACAGGTGGACAACCAGCCGGTCATCGAACGTTTCCCCTCAGGTCGCCAGTTGACCATCTTCAACAGCCAGGCGTTCATCAAAATTGGTGGCGGTGGAGATAAGGGGCGCCACTTCCAGGGCCAGATCTCGGGCCTGTACTACAACGGCCTGCAGGTGCTCAAACTGGCGGCCGAGGGCGACCCCAACGTCCAGACCCAGGGCAACCTGCGGCTGGTGGGCGACGTGCCCTCGGTGCTCACTACCGACACCACCTCCACCACCCCGCTGGCCGACATGTCCACCACCATCATGGAGACGACCACCACCATGGCCACGACCACCACCCGCAAACAGCGCTCGCCCACCATGAGGGACAGTGTCACGCAGAATGCAGATGACCTCTTGGTAGCATCAGCTGAGTGTCCTAGCGATGACGAAGATTTGGAGGAGTGTGAGCCTGGAAATGGAGGCGAATTAGTGTTGCCCATAATAACCGTGGACTCCCTAGACCCCCCGTCCATCGCCACCCGCTACCCGGTAATCCCCTCGCCCCCCACCTCCTACCGCCCTTTCCTCACCTTGCTCGAAACCACCAAAGAGTCCCTCCCTTTGCCCGACGGCCGGCCCCCCTGCCCCCCGGACCAGGAGGACTGCGAGGAGGCCGTCGAGGTGTCCGCGTACGGCTCGGGGGAGATGACCGAGTCGGACGACGAGGACTATTACAAAAACTCCCCCCTGGTCACCGACAGGACTGTCCTCCCCCTCCCCCGGCCGCCGAGGGCGGCGTCCAGAACCCCGAGACCGCCATTTCTCCCGCTCCCCCGACTCCCGCcgccctcccTCCCCGCCGGGAAAATGAACACCCGGGACCGGGTGCTGCTGCCGCCGGCCCACCCCTCGTCGGACCCGGGCCGCCGCAGAGTCCCGGGAATAACCTATCCCCCCAATTTCCCCCATGTTCCCACTCCAGACCCCACGTCTCCCGAGAGAGGACTCCCCGGTGCCGTGGAGGTGCAGCAGTCCAGCAGCACCACGGGCATGGTGGTGGGCATCGTGGCGGCTGCCGCCCTCTGCATCCTCATCCTGCTGTACGCCATGTACAAGTACCGCAACCGCGACGAGGGCTCCTACCAGGTGGACCAGAGCCGCAACTACATCAGCAACTCGGCCACGCAGAGCAACGGCGCCCTGGTGAAAGAGAAACAGCCCGGCGCCGCCAAGACCGTCACCAAGAACAAGaagaacaaagacaaagagTACTACGTCTGAGGGGATGGCGGACGCGCtcggagaaggaaagagagcgagagagaaaaggCGGCGCGGCAAACGCAAACAGAGGGTCGTTCCTTTAAAACTCAGTATTGTCGGGTGGCCATCGCCGCGATCGATTTGACTTCTCGTTTAACGTTAGCCGCGGTGCGGATTTGACCGAAGGCCGTTACGCCTCGGATGCCGACGGCCGCGGGTTGTTTGACGTCTCCTGGACCGTGGGAAAGCGCCGCCGTCGGCGTTCGCGTCGCGGTCTGCGCTTCGTTCCGAGGCGAGCTTAAGCCTTCGCCTTAGACCGTATCGCCGTATTATTTTCCACCAGTTTCAAATTAGCGACTAGACGTCCCTCTGTAAAAAATCGATATACTGCCAGAAACATTGTGTCAAACCCACCTCTGGAAGTGTTCCGCGTCTCtgatctttctctctctcgctctctctctctcttcctctcgtGCGCTCTGTTTCTCTCCTCGTCCGGTGCTAAAGCAGCTGACGCGACGTGAACTCTGCCGTGTTTCAAGCATGTAGTATTCATTTAcgaaaaagagataaaaactgtttttctttctgtggagtttaaaaaaaacaaacaaaaaaaatatgacgACGCTCGACCGTCGTAACAACGTTTAACGTAGCGACTGTGTGAGCTGCCGCCGCTCCGACCTAAACGGACGCTGACCCGTGCGTTTAGCCGCCAAAAACTTGTCGAGGCCAAAACCCCCTCTGGTCGTCCTTTGTTCCAGCGGATCTGTGTCGTGTTTCTGGGGTTTCGAGGCCCCCCCCCGGCAGGCCGGCAGAGAAACCGTGTCGCGTCCTTACGGTTACCGATTAACcgaaaaacagaagaaaaaaaactccagcGAACCGGACAAACTCTGTTCTATATAACTATAAATACATGTATAGACGTTGCGGAAATCTACGGACCTAAAGCGAGAGCGCGCCGACGACGCGCGGCCTAGACGGACTTTAGGATTTGTGACGTCGGAACCCCCGCTCCCCAGACTCCGCCCTCTCGTGAACGGTACGAGACTTTTTCtttgctcttttcttttttcctttgatTCTTTTCTCTGGAGGAATGAGAGACATTTTAGGGATATTCTGAATTCATTCTTGCTGGAGTTCcactgtggagagagagagagagagacgtacCTTGTGGCTGGAGCGGCGGCTGTGTCTCTcggacccccccacccccccctcccactgtctctctctctagccTGACTGGACTGACGGCAGCCAATGGGCGCAGCAAACTCTGTGGGAAGAGCACACGCGTAAGAGTTGAACGGCAGTTCCCTGGAAGATGTACAACCGAACTCTAGTATTCCAATTTTCTCaactctattaaaaaaaaaaccaacaaaaaaaaaactgtaccatcaaaagaaaagaaaaatcctgAAAAAAGTTTGTGAAATGTCTAAATATTTGACTCTCATGCCATTATTAAGAGAAATGTGTTTTCCCTACTATCGTTCCTgtttggagaagaaaaaaaatgtcaatgatTCTGGGAAACGGAAGGTTTCTATGTATTTCCTTTTGCTAATTGAGCAAATGTGATTTGGGTTATGAGCTTGAAACCGTACATTCTCCTTTTATTCCATCCtccatcagtttttttttttttttgtctggcaTCTATTCCTTTTTCTCTGTATGTCTCCCATATCCTGTGAAGAAAGCAGGCTCTATCCATCCTccgttgtgtttttttccccccaccaaTTTGTTTTATATCTATTTCTGTCTGTCTACGCGGCTAGAGACGAGATCGCGGCCTCCGTCGATTTAGTCTCTCGCCGCGTCCGTCtggtttctctctttctccgttcCCGGCATACTTCCCCCCCACTCCCTCCCCCCCAATATCTTCCTGTTCTTTCTAAATGTTATTGTAAAGTGTTCCAGTGCGATGACTCTAAATATGTGTACATTAACAGAGGGAATACACTTGGTTATATACTTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191122 lncRNA downstream 80059 6558298 ~ 6645212 (-) True G141683
TU191127 lncRNA downstream 146516 6577177 ~ 6578755 (-) True G141688
TU191105 lncRNA downstream 213276 6455939 ~ 6511995 (-) True G141667
TU191049 lncRNA downstream 346899 6375998 ~ 6378372 (-) False tbc1d14
TU191040 lncRNA downstream 415376 6308898 ~ 6309895 (-) False sox19b
TU191192 lncRNA upstream 81 7395159 ~ 7462473 (-) True G141741
TU191226 lncRNA upstream 123187 7518265 ~ 7518467 (-) True G141773
TU191227 lncRNA upstream 123431 7518509 ~ 7518757 (-) True G141774
TU191231 lncRNA upstream 126135 7521213 ~ 7521793 (-) True G141778
TU191234 lncRNA upstream 163734 7558812 ~ 7559174 (-) True G141781
XM_039823326.1 mRNA downstream 67821 6655956 ~ 6657450 (-) True LOC120573537
XM_039822067.1 mRNA downstream 156075 6566570 ~ 6569196 (-) True c14h11orf68
XM_039821832.1 mRNA downstream 178688 6514880 ~ 6546583 (-) True LOC120572494
XM_039823557.1 mRNA downstream 243277 6456007 ~ 6481994 (-) False LOC120573666
XM_039821550.1 mRNA upstream 253909 7648987 ~ 7703616 (-) True LOC120572295
XM_039821548.1 mRNA upstream 270505 7665583 ~ 7703618 (-) False LOC120572295
XM_039821546.1 mRNA upstream 270505 7665583 ~ 7703618 (-) False LOC120572295
XM_039821545.1 mRNA upstream 270506 7665584 ~ 7703617 (-) False LOC120572295
XM_039821544.1 mRNA upstream 270507 7665585 ~ 7701187 (-) False LOC120572295
TU191048 other downstream 354178 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 354178 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 388512 6336621 ~ 6336759 (-) True LOC120573735
XR_005641774.1 other downstream 389639 6335494 ~ 6335632 (-) True LOC120573734
XR_005641401.1 other downstream 498465 6221971 ~ 6226806 (-) False LOC120572220
TU191399 other upstream 386866 7781944 ~ 7787595 (-) False fcer1g
unassigned_transcript_685 other upstream 442143 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191428 other upstream 587859 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 712569 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 712569 8107647 ~ 8111920 (-) False LOC120572400

Expression Profile