RNA id: XM_039823326.1


Basic Information

Item Value
RNA id XM_039823326.1
length 1311
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120573537
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6655956 ~ 6657450 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTATGAATATTGATATGAATGGTAGCCTAATGATAAtaattaataacaataatgtcatggttattcttttttttttttacagaaaggaCATGCAGTGGGGCAACGAAGTACTGCTACTGTTCATCAGTGACACAGACACTTGAGCATGCATTCAAAAGACAGTCTGCTTATGCACCTGCATCCAAAAATACTCAAGACCTAACTGCAGCAATCTCCTATTGCATAGCAAAAGACATGATGCCTTCCCAGATGGTTGACAGGCCTGGCTTTTCTGAGGGTGATGAAGGTTGCCGCGCTTCATTACAAAGTGCCTTCACGCAATTGTTTTTCAAAGACTGAAATAccaaagtatgtacaatgcagTCAAAGCTGATGTTAGGAAAAGTTTGGCTCAGGGTGAATTCTTTGCTGCAACTACTGACCTCTGGACCAGTGAAAGTGGGGCTCGTCTACCATACATCAGCTTTACAATTCATTATCTCACCCCAGACTGGCAACTGGAATCACACTGCTTAGAAACCCTGTTTTTCCCAGAAGATCACGCTGCTCAAAATATCAGAGTTTTTTGAAAACATGTTGGATGAGTGGGGGATAAAACAAGACAGATCTGGTCTCCATAACCACAGATAATGCAACCAACATGATCAAGGCCTTTGAACAGTTCCCAGATCTGTGGCTTGGATGCTTCGATCACAATTTGAACTTGGCCATCTCAAAGGCTCTGAAAATTCAGAGAGTTGAAACAGCAGTCAGGGCCTGTCGTCATCTGGTCCAAGGCTTCTCACGGAgctggaagagaaagagaggactgaCAGAAAAGCAAGTTGCCCTCAACTTGCCACAGAAGGCTCTCATCCATGATGTAGTGACCCGATGGGGAGCTGCATACAAGATGCTTGAGCGTTTCCTCAGCCAGCAGCAGGCAGTCTGTGCAACACTGGCTGCAGAAAGGGGAGTTTGGCATCTGATGCCCAAGGATGCTGACATAGTTGTTACGGAGCAACTCTGCCAGCTCCTTGAACCTCTGAGCAAGTTTACAGATGCACTTGCCTCAGAGACTCGAGAAACTTTATCGGCCATTAAGCCAGTCCTTGACCACATCACTGGTGATGCCCTGGAGGAAAATGATGAGGATCCAGCCCTGACCAAGCAGATGAGAGAAGACCTAAACAAGGAGGAGGCCTTGAAGCTGACACCTGCACAAGTCACAGAACCACAAAGCACCAGCACTATCTCCACAGCAGCATCAGAAGGAAAAGGCCTGGCCCGGGTTGCTAAAAAAATGATTACCTCAACAAGCCGAGGATGA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191122 lncRNA downstream 10744 6558298 ~ 6645212 (-) True G141683
TU191127 lncRNA downstream 77201 6577177 ~ 6578755 (-) True G141688
TU191105 lncRNA downstream 143961 6455939 ~ 6511995 (-) True G141667
TU191049 lncRNA downstream 277584 6375998 ~ 6378372 (-) False tbc1d14
TU191040 lncRNA downstream 346061 6308898 ~ 6309895 (-) False sox19b
TU191192 lncRNA upstream 737709 7395159 ~ 7462473 (-) True G141741
TU191226 lncRNA upstream 860815 7518265 ~ 7518467 (-) True G141773
TU191227 lncRNA upstream 861059 7518509 ~ 7518757 (-) True G141774
TU191231 lncRNA upstream 863763 7521213 ~ 7521793 (-) True G141778
TU191234 lncRNA upstream 901362 7558812 ~ 7559174 (-) True G141781
XM_039822067.1 mRNA downstream 86760 6566570 ~ 6569196 (-) True c14h11orf68
XM_039821832.1 mRNA downstream 109373 6514880 ~ 6546583 (-) True LOC120572494
XM_039823558.1 mRNA downstream 165730 6456007 ~ 6490226 (-) True LOC120573666
XM_039823557.1 mRNA downstream 173962 6456007 ~ 6481994 (-) False LOC120573666
XM_039823559.1 mRNA downstream 186423 6456007 ~ 6469533 (-) False LOC120573666
XM_039821634.1 mRNA upstream 67821 6725271 ~ 7395078 (-) False nrxn2b
XM_039821632.1 mRNA upstream 67821 6725271 ~ 7395078 (-) False nrxn2b
XM_039821630.1 mRNA upstream 67821 6725271 ~ 7395078 (-) False nrxn2b
XM_039821636.1 mRNA upstream 67821 6725271 ~ 7395078 (-) False nrxn2b
XM_039821633.1 mRNA upstream 67821 6725271 ~ 7395078 (-) False nrxn2b
TU191048 other downstream 284863 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 284863 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 319197 6336621 ~ 6336759 (-) True LOC120573735
XR_005641774.1 other downstream 320324 6335494 ~ 6335632 (-) True LOC120573734
XR_005641401.1 other downstream 429150 6221971 ~ 6226806 (-) False LOC120572220
TU191399 other upstream 1124494 7781944 ~ 7787595 (-) False fcer1g
unassigned_transcript_685 other upstream 1179771 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191428 other upstream 1325487 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 1450197 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 1450197 8107647 ~ 8111920 (-) False LOC120572400

Expression Profile