RNA id: TCONS_00006817


Basic Information

Item Value
RNA id TCONS_00006817
length 934
RNA type processed_transcript
GC content 0.50
exon number 7
gene id XLOC_003476
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25481046 ~ 25483206 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTGCGATTTCAACCACAATCGGAGAAGTAAGGGGCAAAGGACAGACCTGCCACCAACTCAGCGAGAGAAGAACACTGTGACAGGGTTTCCAAAATGGCAGAGTGGGCCAATGCGGCATTTGCCGCGAGACGGCGAGGGGACGAAACAACAAGGGACAACGCTTTCTCATATACCAACAGCAATAACACAAGGGATCCCTTTGAGGGTCCCAATTACCACATTGCACCTCCCATCTTTGGCTGGAGCAGGTATTGGCCTCATGGTCTGAAGACCTCCTGTGGACCTGATGTGTTTGGAGGAAACGAGGACCCCGGAGTCCAGTCCTACATGCTGGTCCTAATGATCACCTGTTGCATCCTTCCTCTTGCTATCATCATTCTCTGCTACATTGCTGTGTTCCTGGCCATCCATGCTGTTGCCCAGCAGCAGAAGGATTCTGAGTCCACACAGAAGGCCGAGAAGGAAGTGTCCAGAATGGTGGTTGTCATGATCCTTGCTTTCTGCCTTTGTTGGGGTCCGTACACGGCCTTTGCCTGCTTTGCTGCTGCAAACCCAGGCTATGCCTTCCACCCACTGGCAGCAGCCATGCCTGCCTACTTTGCCAAGAGCGCCACCATCTACAACCCCATCATTTATGTCTTCATGAACCGACAGTTCCGCGTATGCATCATGCAGCTCTTTGGAAAGAAGGTGGATGATGGCTCTGAGGTGTCCACATCCAAAACAGAAGTGTCTTCTGTGGCTCCTGCATAAGTCTTACGTGATTTATAGCTCCTGTTGAACAAGAGGGAAGAACTGGACTTTCAGACTCCAAGATGCAATAGTCTTGACTGTACATATGTAGGCAAAACTCCTCTGAAGGAAACTGTTTTATGGCAATGCTGGACTCAAACTGAACACCATATAGTAAGTCCTGAGTGGATTTATTTTGC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-141 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; heart; liver; red sensitive photoreceptor cell; and visual system. Orthologous to human OPN1MW2 (opsin 1, medium wave sensitive 2).

Ensembl:

ensembl_id ENSDART00000132277

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008402 lncRNA upstream 222110 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008615 lncRNA upstream 222110 25257132 ~ 25258997 (+) False XLOC_003467
TCONS_00008613 lncRNA upstream 252912 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00006823 lncRNA downstream 64884 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00008616 lncRNA downstream 346400 25829370 ~ 25830337 (+) True XLOC_003487
TCONS_00008617 lncRNA downstream 705547 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00008618 lncRNA downstream 743112 26226082 ~ 26234069 (+) True XLOC_003490
TCONS_00006845 lncRNA downstream 912943 26395913 ~ 26398030 (+) False XLOC_003492
TCONS_00006813 mRNA upstream 1070 25477643 ~ 25480037 (+) False XLOC_003475
TCONS_00006812 mRNA upstream 5704 25472758 ~ 25475403 (+) True XLOC_003474
TCONS_00006811 mRNA upstream 5833 25459697 ~ 25475274 (+) False XLOC_003474
TCONS_00006810 mRNA upstream 45185 25430851 ~ 25435922 (+) True XLOC_003473
TCONS_00006809 mRNA upstream 45510 25430851 ~ 25435597 (+) False XLOC_003473
TCONS_00006819 mRNA downstream 2804 25485774 ~ 25502491 (+) True XLOC_003477
TCONS_00006820 mRNA downstream 21245 25504215 ~ 25519837 (+) False XLOC_003478
TCONS_00006821 mRNA downstream 25159 25508129 ~ 25519661 (+) True XLOC_003478
TCONS_00006822 mRNA downstream 56728 25539698 ~ 25550845 (+) False XLOC_003479
TCONS_00006824 mRNA downstream 77102 25560072 ~ 25576199 (+) False XLOC_003480
TCONS_00006814 other upstream 2689 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006802 other upstream 178550 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006788 other upstream 353245 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 440470 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006784 other upstream 449861 25010538 ~ 25031246 (+) False XLOC_003461
TCONS_00006838 other downstream 594977 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 1121641 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006865 other downstream 2037486 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006890 other downstream 3869131 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 4083777 29566747 ~ 29571528 (+) True XLOC_003523

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00009743 True 1887 mRNA 0.61 10 CM030126.1 45376438 ~ 45389713 (+)