RNA id: AMCG00009743


Basic Information

Item Value
RNA id AMCG00009743
length 1887
RNA type mRNA
GC content 0.61
exon number 10
gene id AMCG00009743
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45376438 ~ 45389713 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCAAGCTTCGCCCAGACACCCGCCAGGAAGAGCTCCCGGAGGACTTCTACATCCCCATCCCGCTGGACACCAACAACATCTCCGCCCTATCCCCGTTCCTGGTGCCCCAGACCCACCTGGCCAGCCCGGGGGTCTTCATGGGCATGGCCACATTCATGTTCTTCCTGGTGGTCACCGGGCTGCCCATCAACCTGCTGACCGTGGTGTGCACTATCAAGTACAAGAAGCTACGCTCACACCTCAACTACATCCTGGTCAACCTGGCTGTGGCCAACCTGCTGGTGTGCAGCGTGGGCTCCTTCACCGCCTTCTACAGCTTCTCCAACATGTACTTCCGCATGGGCGCCCTGGCCTGCAAGATCGAGGGCTTCGTGGCCACGCTGGGAGgcATGGTCAGTCTGTGGTCTCTGGCCGTGGTGGCGTTTGAGAGGTTCCTGGTCATCTGCAAACCAGTCAGCAATTTCAGCTTCAAGAGCTCCCACGCCATCATCGGCTGTGCGATCACATGGATCTTCGCCCTGCTGGCCTCGGGGCCCCCGCTGGTGGGATGGAGCCGGTACATCCCCGAGGGCCTCCAGTGCTCCTGCGGCCCCGACTGGtacaccaccaacaacaaatacaacaacgAGTCCTACGTCATGTTCCTGTTCATCTTCTGCTTCGGCTTCCCCTTCAGCGTCATCGTGTTCTGCTACACCAAGCTGCTGTTCACCCTGCGCTCGGTGGCAAAGTCGCAGGAGCAGTCGGCCACCACGCAGAAGGCGGAGCGCGAGGTGACCAagatggtggtggtgatggtgttGGGCTTCCTGGTGTGCTGGCTGCCCTACGCCTCCTTCTCGCTGTGGATCGTCATGAACCGGGGCGAGGCCTTCGACCTGCGCCTGGCCAGCGTGCCCTCCATCTTCTCCAAGGCCTCCACCatGACAGAGCGCTGGGGGAGCGCCATGTTCGCCGCCCGTCGGAGGCACGAAGAGGATACCACACGAGACTCCATGTTCGTCTACACCAACAGCAATAACACcagggACCCCTTCGCCGGCCCCAACTACCACATTGCCCCCCGCTGGGTGTACAACCTGGCCACCCTGTGGATGATATTCGTGGTGCTGGCGTCCATCTTCACCAATGGCCTGGTGCTGGTGGCCACCTACAAGTTCAAGAAGCTGCGCCACCCGCTCAACTGGATCCTGGTCAACCTGGCGATCGCCGACCTGGGCGAGACCCTCATCGCCAGCACCATCAGCATCTGTAACCAGATCTTCGGCTACTTCATCCTGGGCCACCCCATGTGCATGATCGAGGGCTTCACGGTCTCCACCTGCGGTATCACAGCCCTGTGGTCTCTGACGGTGATCTCCTGGGAGCGGTGGGTGGTCGTCTGCAAGCCCTTCGGCAACGTCAAGTTCGATGCCAAGTGGGCGACAGGGGGCATCCTCTTCTCCTGGATTTGGTCGGCCTTCTGGTGTTCCCTCCCCTTATTCGGGTGGAGCAGGTTCTGGCCCCACGGTCTGAAGACGTCCTGTGGCCCTGACGTGTTCTCGGGCAGCACGGACCCCGGGAAGGCGGAGCGGGAGGTATCCAGGATGGTGGTGGTCATGATCCTAGCCTACATCTTCTGCTGGGGCCCTTACACCTTTTTTGCCTGCTTCGCCGCTGCCAGTCCCGGCTACGCCTTCCACCCGCTGGCCGCCTCCCTGCCCGCCTACTTCGCCAAGAGCGCCACCATCTACAACCCCATTATCTACGTGTTCATGAACCGACAGTTCCGCAACTGCATCATGCAGCTGTTCGGCAAGAAGGTGGACGACGGCTCCGAGGTGTCCTCGTCGTCCAAGACCGAAGTGTCCTCGGTGTCCAGTTCCTCCGTGTCTCCGGCATAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04251 OPN1LW, OPN1MW; long/medium wavelength-sensitive opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73535 lncRNA upstream 43582 45329784 ~ 45332856 (+) True G58822
TU73548 lncRNA upstream 98842 45276488 ~ 45277596 (+) True G58830
TU73541 lncRNA upstream 101405 45266939 ~ 45275033 (+) True G58825
TU73492 lncRNA upstream 178174 45194523 ~ 45198264 (+) True G58792
TU73472 lncRNA upstream 232966 45143175 ~ 45143472 (+) True G58776
TU73604 lncRNA downstream 122923 45512636 ~ 45513047 (+) True G58876
TU73708 lncRNA downstream 183557 45573270 ~ 45575964 (+) True AMCG00009760
TU73715 lncRNA downstream 192806 45582519 ~ 45584669 (+) False AMCG00009758
TU73710 lncRNA downstream 195045 45584758 ~ 45585330 (+) True G58971
TU73711 lncRNA downstream 195111 45584824 ~ 45585330 (+) False G58971
AMCG00009749 mRNA upstream 64046 45309557 ~ 45312392 (+) True AMCG00009749
AMCG00009736 mRNA upstream 122257 45251935 ~ 45254181 (+) True AMCG00009736
AMCG00009734 mRNA upstream 134534 45236167 ~ 45241904 (+) True AMCG00009734
AMCG00009735 mRNA upstream 155751 45212567 ~ 45220687 (+) True AMCG00009735
AMCG00009737 mRNA upstream 188326 45187220 ~ 45188112 (+) True AMCG00009737
AMCG00009753 mRNA downstream 1039 45390752 ~ 45396023 (+) True AMCG00009753
AMCG00009751 mRNA downstream 32814 45422527 ~ 45435865 (+) True AMCG00009751
AMCG00009752 mRNA downstream 48256 45437969 ~ 45453979 (+) True AMCG00009752
AMCG00009750 mRNA downstream 76946 45466659 ~ 45476997 (+) True AMCG00009750
AMCG00009761 mRNA downstream 118054 45507767 ~ 45511037 (+) True AMCG00009761
TU73437 other upstream 318564 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 724471 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 777110 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 805907 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 988474 44386497 ~ 44387964 (+) False G58522
TU73602 other downstream 118481 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 170264 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 364873 45754586 ~ 45755115 (+) True G59084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006817 False 934 processed_transcript 0.50 7 NC_007122.7 25481107 ~ 25482970 (+)
grasscarp (Ctenopharyngodon idella) TU496369 True 1666 lncRNA 0.46 6 CI01000306 3123477 ~ 3125954 (-)