AMCG00009735 (prickle3,LOC102790576)


Basic Information

Item Value
gene id AMCG00009735
gene name prickle3,LOC102790576
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45212567 ~ 45220687 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009735
ATGAAGAGGAAAGCCTCTTGGCCCATCTgttgtgagagagagacgcatCCCAGTACAAGTGTGTCGTTCAGCGCAGGGTCCTGCGGGCGACTGTGCTCCTCTTTGGGGGGCTGCGGCGGGAAGATCTGCCTGCACTGTAAGTGCGCGCGTGAGGAGCATGCAGTGCGCGCCGTGCCGGGGGACCTGGAGAAGATGATGGTGAAGCTGGTGTCCGACTTCCAGCGCCACTCCATCTCCGACGACGACTCTGGCTGCGCCTCCGAGGAGTACGCCTGGGTCCCCCCCGGGCTCAAACCCGAGCAGGCTGACCCCTGTGTGATGTGTCTGCAGGTGTACCAGTACTTCAGCTGCCTCCCCGAGGACAGGGTGCCCTATGTGAACAGCCCTGGAGAGAGGCACCGCATCAAGCAGCTGCTGCACCAGCTCCCAGCGCACGACAGCGAGccGCAGTACTGCAACTCCCTGGACGAGGACGAGAGGAGGGAGCTGAGGATGTTCTCCCagcagaggaagagggagaacCTGGGCAGGGGGACGGTCAGACTGTTCCCCGTTACCATGACCGGAGCCATCTGTGAACAGtGTGGCAAGCAGATCCGGGGGGGGGACATCGCGGTGTTTGCCACACGGGCGGGGCATGGGGCCTGCTGGCACCCGCAGTGCTTCCAGTGCGCCACCTGCAGCGAGCTGCTCGTCGACCTCATATACTTCTACCAGGACGGCAAGATCTACTGCGGCCGGCACCACGCTGAGAGCATCAAGCCCCGGTGCCAGGCCTGCGACGAGATCATCCTGGCGGACGAGTGCACGGAGGCGGAGGGCCGGCACTGGCACATGAAGCACTTCTGCTGCTTCGAGTGCGAGGCGGCACTGGGGGGGCAGCGCTACATCATGAGGGAGAGCCGGCCCTACTGCTGCGGCTGCTACGAGGCCCTGTATGCCGAGTACTGCGACACCTGCGGGGAGCACATAGgtATAGACCACGGTCAGATGACCTACGAGGGGCAGCACTGGCACGCCACCGAGGCCTGTTTCTGCTGCGCCCGCTGCCGGCAGCCTCTCCTGGGCCGCCCCTTCCTGCCCAAGCAGGGCCTGATCTTCTGCTCCCGCGCCTGCAGCCTGGGGGACGACCCCGACGCCTCCGACTCCTGTGACTCCGCATTCCAGAGCGGACACTCCCTGGGCAGCCAGCGCCGCGCCAAGACGCACTCGCAGACCAGCACCCCCAGCGGCACGAACAGCGCCCCCGCCAGGAGGGAGGCTGCCAATGCAGCGCCGTCCCCGCCCCCCGTCCCCAACGGCCTCCCGCTGGCCAACGGGCAGAGACCCTCCCCCCCGCCCTACCCGCAGGACCGGCTGAGCAACGGCTGGGGCCTGGCCGGACCCCCCGACCAATCGCGCGGCGGCCCGGGCCGGGGACCCCCCGCTCCCAGGCCCGACCGGCCAATCAGCTGTCTGGAGTTCTCGGCGGATCAGAACCCCGAGTTTGggccccccccacctcccaggTACACCTCCCGAGGGACGTCGACCACGAGGGACCCCGGGACCAAGGGGGACCCCGGCTCTGCAGtgggtGAGCGTGTGAACTTCAGCCACTCTCAGCGCTACTCGATGCCCAACCTGGGGAGTCATCTCTGTCCTGGGGAGGGCCCGCCTCCTCCCCAGGGGGACCCCTCTGATTCACTGCCCAGATCCCAGCGCGGCGAATTGCAGCCCCCATCCCGGTTTGAGGCCCCGCCCCCGCCAGCCTCGGCCACCCAACTGTCTCGCACCAACACCGCCCGCGTCAGCTTCCGGGAGCCGATCAGCAGCAGCTTCCTGGTGGAGgacgaggaggatgaggacgaggacggggaggaggaggaggagcggcGGCAgcgagaggaggaagaggaggaggaagggggtgaggggagggaggtggAGGGAGAGCAAGGTGAGGAGGGCGGAGGAGACGCCGGGTGCCGGAGCAGAAACCGATTCCAGAGACACGGCTGCCGGATCCCGCCCCAGATGGACCTGCTggTGGACGGGCCGTACCAGCAGCGCAGTTTCCGACGGGGGTCCCGCAGTCGCCCCGGCTCCGAGTCCTGTCTGCACCTGGGCACGGAGCGCCGCTTCCGGCAGTCCTGCGCCGAGCGGCCCCGGCTGGACGCGCTGGACTGGCGGGGGACCGGCAGGGCCTTCTCCCCGGGGGGCCCTGTCTCCACCCCGCCGCCCCTCACCCTGCGACCCGGCCGGCCGCACCACGAGGACTCCTGCTCCACCTGCTCCTCCGACTCCGACTCCGAGGAGGACGGCTTCTTCCTGGGCCAGCCCATCCCCCTGCCGCCCCAGCTGCGCGACCCCCACGCGCCGGCCCCCCGCCACGCCCCGGACGCCGAGCGAGGGAGGGAGCGGGACAAGGAGGGCGAGGGCGGCCTGCGCGCCAGTCTGCGccggagggggagggggcggacAAACAGCGTGAGCAGAGACAAGGACAAGAACTGCGTGCTGTCGTAG

Function

symbol description
prickle3 Predicted to enable zinc ion binding activity. Human ortholog(s) of this gene implicated in Leber hereditary optic neuropathy. Orthologous to human PRICKLE3 (prickle planar cell polarity protein 3).

NR:

description
PREDICTED: prickle-like protein 3 isoform X1

GO: NA

KEGG:

id description
K04511 PRICKLE; prickle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009735 True 2508 mRNA 0.69 10 45212567 45220687

Neighbor

gene id symbol gene type direction distance location
AMCG00009737 NA coding upstream 24455 45187220 ~ 45188112 (+)
AMCG00009738 NA coding upstream 27835 45175166 ~ 45184732 (+)
AMCG00009729 LOC108228711,LOC105898895,LOC107731232,LOC103365588,LOC103384398,LOC101079199 coding upstream 43284 45139540 ~ 45169283 (+)
AMCG00009731 NA coding upstream 75709 45135424 ~ 45136858 (+)
AMCG00009727 NA coding upstream 93381 45115663 ~ 45119186 (+)
AMCG00009734 NA coding downstream 15480 45236167 ~ 45241904 (+)
AMCG00009736 NA coding downstream 31248 45251935 ~ 45254181 (+)
AMCG00009749 NA coding downstream 88870 45309557 ~ 45312392 (+)
AMCG00009743 NA coding downstream 155751 45376438 ~ 45389713 (+)
AMCG00009753 NA coding downstream 170065 45390752 ~ 45396023 (+)
G58792 NA non-coding upstream 14303 45194523 ~ 45198264 (+)
G58776 NA non-coding upstream 69095 45143175 ~ 45143472 (+)
G58668 NA non-coding upstream 288867 44922084 ~ 44923700 (+)
G58660 NA non-coding upstream 290930 44918043 ~ 44921637 (+)
G58666 NA non-coding upstream 319489 44892845 ~ 44893078 (+)
G58825 NA non-coding downstream 46252 45266939 ~ 45275033 (+)
G58830 NA non-coding downstream 55801 45276488 ~ 45277596 (+)
G58822 NA non-coding downstream 109097 45329784 ~ 45332856 (+)
G58821 NA non-coding downstream 118918 45339605 ~ 45398453 (+)
G58876 NA non-coding downstream 291949 45512636 ~ 45513047 (+)
G58747 NA other upstream 154693 45056065 ~ 45057874 (+)
AMCG00009706 pim1 other upstream 452509 44750176 ~ 44760058 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 560600 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 608958 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 642036 44561777 ~ 44570531 (+)
AMCG00009761 NA other downstream 287080 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 339290 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 352583 45573270 ~ 45575964 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other downstream 355852 45576539 ~ 45584727 (+)
G59084 NA other downstream 533899 45754586 ~ 45755115 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003398 prickle2b coding NC_007122.7 CM002895.2 19271557 ~ 19471758 (+)