AMCG00009758 (abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428)


Basic Information

Item Value
gene id AMCG00009758
gene name abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45576539 ~ 45584727 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009758
AAACAAACGAGAAAGTTGCGTCGCAGCTGTCAGGAAGTCACGGGCAGCAGGCAGGCTTTCTGCGGGCGCTGCGCGGCTCTGAGCGGCCAGGCACCGGGGGACAGCGGGGCACTGCGGGGCACTGCCTGGGCAGCTGGACCTGTTTGAGCGacagagacggacagacagcCGCTCCGGACTTGCTGCAGTGCAGAGTGTCTCTCGTTAACAAAACCAACGACCAGTTGCGCAGCTGTTTGGATCTTCTTGCTCCCCGTTTGCGCAGATCAGTCGCCGTGCGTGCGGTGCGGTGACGTCACTTCAGAAAGTTCGCAAAGTCGCGGGTGTGGAGGCTGCGCTCTGCACCGGGCActtcacacatacatatttataccgCTCATGTCCTCCGTGCGTGTGGGTTAATAAGGCTGAGACCGGGGCAGTGTGGCGGGCGGAGTGAGCGCTGTCCTGCGTGTGCACAGGGAGTCTGTCTCCAGCCTGTGGAGCATTTTCAGGACTCCTGTTTTACACTGCCAGGTTGGGGTTTTAAATGAGAATATTATTGATTTGAGTTAACGAGCACGATCTGTCTAGTGTGACACTGTCTTATTACtttttgaatgtaattattgttaaaccataaaacaacaaatctgcCCGTGCGACCCTGTCAGCTGCGTCCGTCTGGAACCGGTCTTGAGTTCAGCCCGATGTTGCCGTGTTTTAGattaaatatgcaattatattaatttgtccTGGAgatattattcataataataataacaaagaatCCTCCTCTGCGAACAATCGATGTGCATTTGGAGACTCTGACGCCAGGGCTGctgtcaggtgtgtgtgtgtgtgtgtgtgtgtgtgcgggatCTGACTGCTGGGGGGCCAGGCTGTGGGGTGTGATCCACTGATCTGTGGCCGACGGGGCAGGCCAGCGACGTGGGGCAACGCcgagaaaaaaaataaggctGAGCTATCCAGGAGTGAGGAGAGTCAGATGCAATCCAGCCTGTgttcactctcactctcactctcactttctctctcactcacacattcaTGTGTGGCCCGTTATAAGacaactaaaatattaaatcagttttatatCTACATACAGAGAATGTGTGTCAGGCCAATTTTGAATTTaactgaaagagagaaagggagagactTGGATAAATGACATAAAACAATCTCCGGTCAGGCTCAGtgtgctgcagtgcagtgtgtttacTACAGTCTACCTCGGTGTACTGCAGAGCACAGTACATAGTCTCAGTGCGGTAAAGTCCGTTGTTCCTCAGTGTGCGCAGTCTCTCAGTGGCGTATACAGCACAGTGTGCGGTGAGACCATGGCCTCTCTCCCGAACCTGTGGCTGCCCAGGCCGCTGAGGAAGACTACGGTGGCCCAGCGTgcggcgctgctgctgctggcggCCTATGCAGCCAAAAAACTGCACCCCATCCTGTCCCGGCACCTTGGGGGGATTGGTGGCTGGGCGGGCGGACGGACGAAGCTCAGGGCGCCGCTGGAGGTGAACGCGGTGAAGAGGAAGGGGGCCGTGGAGAAAGAATcacaggaggaagaagaggacagggaggaggaggaggcgggagAGGGGTGTCTGCCGGCCGTCAATGGCGAGTTCCTGCGGAGGCTGCTCGGCCTGCTGCACATCCTGTTCCCCCATCTGTTGTGCCGTGAGGTGGCACTGCTCGCCTGCCACTCTGGCGCCCTGGTGTCACGCACCTTCCTGTCAGTGTACGTGGCTGGGCTGGATGGCAAGATCGTCAGGACCATCGTCAGGAAGGACCCACGCGCCTTCACCTGGCAGCTGGCGAGGTGGCTCCTCATCGCCATCCCGGCCACCTTCGTGAACAGCGCCATCCGCTACCTGGAGGGGCAGCTGGCCCTGGCGTTCCGCACCCGGCTGGTCCGTCACGCCTACGGCCTGTACTTCAGCCAGCAGACGTACTACCGGGTCAGCCACATGGATGGCCGGCTGGCCAACCCCGACCAGTCGCTGACTGAGGACATGGTGGTGTTCGCCGGCTCGGTGGCCCACCTGTACTCCAACCTCACCAAGCCCATCCTGGACGTGGTGGTCACCAGCTACGCCCTCTACCAGCAGGCCAAGGCCAAGGGCGCGGGCACCGGCTGGCCTACCTGCATCGCCGGCATCGTGGTGGCCGTCACCGCCAAGGTGCTGCGGGCCTGTTCCCCCCGCTTCGGGCAGCTGGTGGCAGAGGAGGCCCGGCGCAAGGGCGACCTGCGCTACATGCACTCTCGCATCATCGCCAACGCAGAGGAGATCGCCTTCTACGCGGGGCACCAGGTGGAGATGGCTCAGCTCCAGCGCTGCTACCAGGCCCTGTCCTCCCAGATCGACCTGATCCTGTTCAAGCGCCTGTGGTTTGTGATGCTCGAGCAGTTCCTCATGAAGTACCTGTGGAGCGCCTCGGGACTGCTCATGGTGGCCGTGCCCATCATCACCGCCACCGGCTACTCGCACACTGGTGGGGAGGTGGCGGGGGGCCCCGAGGGGGAGCAGGTGAGCGAGCGCACAGAGGCCTTCACCACGGCACGCAACCTGCTGACCGCCGGCGCCGACGCCATCGAGAGGATCATGAGCTCCTACAAGGAGgTGACCGAGCTGGCTGGCTACACCGCCCGCGTGCACGAGATGTTCTCCGTGTTTGAGGACGTGAGGGGAGGGGTGTACCGGCGGTCCCAGGCTGGGGGGGGCGGCAGTGCGGAGGCCAAACTCGGACTGAAGAGGGAGGGGCTGCTAGAGATCagaggtcaGGTGATCGAtgtggatcagggcatcagctGTGAGAACCTGCCCATCATCACTCCCACGGGGGAGGTGGTGGTGTCCAGTCTGAATATAGAGGTGGAGGAGGGGATGCACCTGCTCATCACGGGGCCCAACGGCTGTGGGAAGAGCTCCTTGTTCCGGGTGCTCAGTGGGCTCTGGCCGGCATATGGGGGGgAGATGAGGGGCCGGGACTTCAGTGACACTGACCTGGAGGCCATGCTGGACACGGTCAACCTGCGCTACatactggagagagagggagGCTGGGATGCAGAGAGCGACTGGAAGGACGTGCTGTCGGGGGGAGAGAAGCAGCGCATGGGAATGGCCAGGATGTTCTACCACAGgCCCAAGTACGCCCTGCTGGACGAGTGCACCAGTGCTGTGAGCATCGATGTAGAGGGCAAGATCTTTCAGGCCGCCAAGGATGCCGGCATTGCCCTGCTATCCATCACACACCGGCCATCGCtgtggAAGTTCCACTCCCACCTGCTGCAGTTCGACGGGGAGGGCGGGTGGCGCTTTGAGCCCCTGGACGCGTCCACACGGCTTTCCCTGCAGGACGAGAAGCTGCGCCTGGAGGCCCAGCTGACGGGGATCCCCCGGGTGCAGCACAGGCTGGCCGAGCTGCGCAGGATCCTGGGGGAGGACAGCGGCCACGGGGAGGCCACAGGGAggaggcaggaggaggaggaggagggggggagtcGGGAGGTGGTGGTGGGAGAAGGGACA
>TU73715
gggagagagagggagtgtctgtcagaggggaggagagggatGGGGCAGTGAGGAGAGAATGGGGGTGAGGAACGGGTGCCTGTGTGGCACTCAGAGCAGTGGCTGTGCTGTGGCTACAGGCTGGGATGCAGAGAGCGACTGGAAGGACGTGCTGTCGGGGGGAGAGAAGCAGCGCATGGGAATGGCCAGGATGTTCTACCACAGGTAAGaatcagtgtctgtctgtgtttgcaaGAATCAGTCTGACAGCGCAGTGTTCTAATAGTGCAGCGCAGTGTTCTATAGCCCAGTGTTCTATAGCCCAGTGTTCTATAGCCCAGTGTTCTATAGCCCAGTGTTCTATAGCCCAGTGTTCTATAGCCCAGTGTTCCAATACTGCAGCGCAGTGTTCTATACACCAGTGTTCTAGTAGTGCAGCGCAGTGTTCTATAGCCGTGTTCTAATAGTGCAGCGCAGTGTTCTATAGCCCAGTGTTCCAATAGTGCAGCGCAGTGTTCTATACACCAGTGTTCCAATAGTGCAGCGCAGTGTTCTATTCACCAGTGTTCCAGTAGTGCAGTatattgcagtgcagtgcagtgtttgaCAGTGAagtgtgctgtgctgctgctgttgcaggCCCAAGTACGCCCTGCTGGACGAGTGCACCAGTGCTGTGAGCATCGATGTAGAGGGCAAGATCTTTCAGGCCGCCAAGGATGCCGGCATTGCCCTGCTATCCATCACACACCGGCCATCGCtgtggAAGTTCCACTCCCACCTGCTGCAGTTCGACGGGGAGGGCGGGTGGCGCTTTGAGCCCCTGGACGCGTCCACACGGCTTTCCCTGCAGGACGAGAAGCTGCGCCTGGAGGCCCAGCTGACGGGGATCCCCCGGGTGCAGCACAGGCTGGCCGAGCTGCGCAGGATCCTGGGGGAGGACAGCGGCCACGGGGAGGCCACAGGGAg

Function

symbol description
abcd1 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and long-chain fatty acid transporter activity. Involved in motor behavior and swimming behavior. Acts upstream of or within several processes, including oligodendrocyte development; positive regulation of myelination; and very long-chain fatty acid metabolic process. Predicted to be located in peroxisome. Predicted to be active in peroxisomal membrane. Is expressed in central nervous system; floor plate; gut; interrenal gland; and pronephros. Used to study adrenoleukodystrophy. Human ortholog(s) of this gene implicated in adrenoleukodystrophy. Orthologous to several human genes including ABCD1 (ATP binding cassette subfamily D member 1).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009758 True 3548 mRNA 0.60 11 45576539 45584727
TU73715 False 948 lncRNA 0.57 3 45582519 45584669

Neighbor

gene id symbol gene type direction distance location
AMCG00009757 NA coding upstream 45103 45521353 ~ 45531436 (+)
AMCG00009750 NA coding upstream 99542 45466659 ~ 45476997 (+)
AMCG00009752 NA coding upstream 122560 45437969 ~ 45453979 (+)
AMCG00009751 NA coding upstream 140674 45422527 ~ 45435865 (+)
AMCG00009753 NA coding upstream 180516 45390752 ~ 45396023 (+)
AMCG00009763 plxnb3,LOC101165957,LOC102313277,LOC102780548,LOC102199036,LOC101474638 coding downstream 13880 45598607 ~ 45629378 (+)
AMCG00009764 LOC103384391,LOC107373447 coding downstream 58511 45643238 ~ 45647541 (+)
AMCG00009765 NA coding downstream 65357 45650084 ~ 45656237 (+)
AMCG00009762 NA coding downstream 72034 45656761 ~ 45660486 (+)
AMCG00009772 NA coding downstream 290906 45875633 ~ 45879015 (+)
G58876 NA non-coding upstream 63492 45512636 ~ 45513047 (+)
G58821 NA non-coding upstream 178086 45339605 ~ 45398453 (+)
G58822 NA non-coding upstream 243683 45329784 ~ 45332856 (+)
G58830 NA non-coding upstream 298943 45276488 ~ 45277596 (+)
G58825 NA non-coding upstream 301506 45266939 ~ 45275033 (+)
G58971 NA non-coding downstream 31 45584758 ~ 45585330 (+)
G59006 NA non-coding downstream 54908 45639635 ~ 45640037 (+)
G59026 NA non-coding downstream 89202 45673929 ~ 45674702 (+)
G59028 NA non-coding downstream 90976 45675703 ~ 45683641 (+)
G59047 NA non-coding downstream 117240 45701967 ~ 45702889 (+)
AMCG00009760 NA other upstream 575 45573270 ~ 45575964 (+)
AMCG00009759 NA other upstream 4284 45559977 ~ 45572255 (+)
AMCG00009761 NA other upstream 65502 45507767 ~ 45511037 (+)
G58747 NA other upstream 518665 45056065 ~ 45057874 (+)
AMCG00009706 pim1 other upstream 816481 44750176 ~ 44760058 (+)
G59084 NA other downstream 169859 45754586 ~ 45755115 (+)
AMCG00009782 LOC108266008,LOC103385383 other downstream 359905 45944632 ~ 45997710 (+)
AMCG00009781 NA other downstream 415315 46000042 ~ 46022184 (+)
AMCG00009786 NA other downstream 519409 46104136 ~ 46128356 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035439 abcd1 coding NC_007119.7 CM002892.2 8046086 ~ 8084343 (+)