XLOC_035439 (abcd1)


Basic Information

Item Value
gene id XLOC_035439
gene name abcd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 8046086 ~ 8084343 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069545
CAATAAGCTACAAACAAAATGTCTGTGTACTCAAAACTGCCCTCTCAACTGAAGAAACCCCTGGTGAAAAAGGCTGTTGTGCTTCTCATTGCGCTCTATGGGGTGAAGAAACTATCCCCGTACTTCTTCGGCAAGCTCAAAGGAAGGACTAGTAAACAAGTTAAGGGCGCTGACCCGCTTACCTCCAATGGAGAGCCCCTAGTAGAAGCTGCGAGGAAAAGGAAACGCTCACCAGCGGTGAACCGTGAGTTTTTCGACAGGTTGATTCGCCTCTTGAAAATCCTCTTTCCTCGGCTTTTCTGCAAGGAGCTCGGCCTGCTCGGTTTCCACTCTCTGGCTCTCATTTCACGCACCTTTCTCTCCATCTATGTGGCCAATTTGGACGGGCAAATAGTGAAAACCATTGTGAAGAAGGATCCTAGAGCGTTTGTGGTGGAGTTAACCAAATGGCTGCTCATTGCTATTCCTGCCACGTTTGTGAACAGTGCCATCAGGTACCTGGAGGGTCAGCTCACCCTTGCTTTCCGCACTCGGCTGGTCACCCATGCCTACATGCTGTATTTCAGCGATCAGACCTACTATCGTGTCAGCAACATGGACGGCAGGTTGGCAAACCCTGACCAGTCGTTGACCGAAGATGTGGTGATGTTTGCTGCTTCTGTGGCTCATCTGTATTCAAACCTGACCAAGCCCATCTTGGATGTGGTGGTGACTTGTTACACGCTCATTAAAACGGCTGAATCCAAAGGCGCCAACACCACTTGGCCGTCAGTCATAGCTGGCATCGTGGTGGCACTCACTGCCAAGGTTCTTAGAGCATTTTCACCCCGCTTTGGTAAACTGGTGGCAGAGGAAGCCAGGAGGAAAGGAGACCTGAGATACATGCATTCGCGCATCATCGCCAATTCAGAGGAGATCGCCTTCTATGGAGGACATAAGATCGAGATGTTGCAGCTGCAGCGGAGCTACAACTCGCTGTCCAGGCAGATTAACCTGATCTTGTTTAAGAGGCTGTGGTATGTCATGCTGGAGCAGTTCCTGATGAAATATCTCTGGAGCGCATCGGGCCTGGTTATGGTTGCTGTGCCTATCATCACTGCCACCGGATACTCTAAATATGATTCAGAGGATGTGAAACAGGCAGCTCTGGATATGAAGGAGGAGGACCTGGTGAGTGAACGTACACAGGCCTTCACCACTGCGCGCAGCCTCCTGAACGCTGCAGCTGATGCTGTGGAGAGGATCATGGTCTCCTACAAAGAGGTCACAGAACTGGCTGGCTATACGGCGCGTGTGTATGAGATGTTCGAGGTGTTTGAGGATGTCCGTGACGGTGTGTATCGTCGTTCCGCCACAGAGGTGAAGCCAGAAGAGACTGGAGCGCCTCAGAATGTTACACATGGCATGAGAGTGGAGGGACCGCTGCAAATCAGAGGTCAGGTGATTGATGTGGAGCAGGGCATCAAATGTGAAAACCTGCCCATAATAACTCCTACAGGAGACGTGGTGGTTTCCAGCCTGAACATGCAGGTTGATGAAGGAATGCATCTGCTGATCACGGGCCCTAATGGTTGTGGAAAAAGCTCTCTGTTCAGGATCCTGAGTGGACTCTGGCCGGTCTACAGCGGCGTGCTCTACAAACCCTCACCCGATCACATGTTTTACATACCTCAAAGGCCTTATATGTCGGTGGGAACGCTGCGAGATCAAGTGATTTATCCTCATTCTGTTCAGGAGATGCAGGAGAAGGGCATTACTGACCGGCAGCTGGAGGAAATCCTGCAAACCGTGAGCCTCCGTTATATCCTGGAGAGAGAGGGAGGCTGGGATGCAGTGAGCGACTGGAAGGATGTGTTGTCTGGAGGAGAGAAGCAGCGGATGGGCATGGCAAGGATGTTTTACCATAAGTACGTCACCAATACTTacattttgattaattaaataatttaatttagtcctaagtaaataataaatatgtgatCTGTTTTACTG
>TCONS_00069546
CAATAAGCTACAAACAAAATGTCTGTGTACTCAAAACTGCCCTCTCAACTGAAGAAACCCCTGGTGAAAAAGGCTGTTGTGCTTCTCATTGCGCTCTATGGGGTGAAGAAACTATCCCCGTACTTCTTCGGCAAGCTCAAAGGAAGGACTAGTAAACAAGTTAAGGGCGCTGACCCGCTTACCTCCAATGGAGAGCCCCTAGTAGAAGCTGCGAGGAAAAGGAAACGCTCACCAGCGGTGAACCGTGAGTTTTTCGACAGGTTGATTCGCCTCTTGAAAATCCTCTTTCCTCGGCTTTTCTGCAAGGAGCTCGGCCTGCTCGGTTTCCACTCTCTGGCTCTCATTTCACGCACCTTTCTCTCCATCTATGTGGCCAATTTGGACGGGCAAATAGTGAAAACCATTGTGAAGAAGGATCCTAGAGCGTTTGTGGTGGAGTTAACCAAATGGCTGCTCATTGCTATTCCTGCCACGTTTGTGAACAGTGCCATCAGGTACCTGGAGGGTCAGCTCACCCTTGCTTTCCGCACTCGGCTGGTCACCCATGCCTACATGCTGTATTTCAGCGATCAGACCTACTATCGTGTCAGCAACATGGACGGCAGGTTGGCAAACCCTGACCAGTCGTTGACCGAAGATGTGGTGATGTTTGCTGCTTCTGTGGCTCATCTGTATTCAAACCTGACCAAGCCCATCTTGGATGTGGTGGTGACTTGTTACACGCTCATTAAAACGGCTGAATCCAAAGGCGCCAACACCACTTGGCCGTCAGTCATAGCTGGCATCGTGGTGGCACTCACTGCCAAGGTTCTTAGAGCATTTTCACCCCGCTTTGGTAAACTGGTGGCAGAGGAAGCCAGGAGGAAAGGAGACCTGAGATACATGCATTCGCGCATCATCGCCAATTCAGAGGAGATCGCCTTCTATGGAGGACATAAGATCGAGATGTTGCAGCTGCAGCGGAGCTACAACTCGCTGTCCAGGCAGATTAACCTGATCTTGTTTAAGAGGCTGTGGTATGTCATGCTGGAGCAGTTCCTGATGAAATATCTCTGGAGCGCATCGGGCCTGGTTATGGTTGCTGTGCCTATCATCACTGCCACCGGATACTCTAAATATGATTCAGAGGATGTGAAACAGGCAGCTCTGGATATGAAGGAGGAGGACCTGGTGAGTGAACGTACACAGGCCTTCACCACTGCGCGCAGCCTCCTGAACGCTGCAGCTGATGCTGTGGAGAGGATCATGGTCTCCTACAAAGAGGTCACAGAACTGGCTGGCTATACGGCGCGTGTGTATGAGATGTTCGAGGTGTTTGAGGATGTCCGTGACGGTGTGTATCGTCGTTCCGCCACAGAGGTGAAGCCAGAAGAGACTGGAGCGCCTCAGAATGTTACACATGGCATGAGAGTGGAGGGACCGCTGCAAATCAGAGGTCAGGTGATTGATGTGGAGCAGGGCATCAAATGTGAAAACCTGCCCATAATAACTCCTACAGGAGACGTGGTGGTTTCCAGCCTGAACATGCAGGTTGATGAAGGAATGCATCTGCTGATCACGGGCCCTAATGGTTGTGGAAAAAGCTCTCTGTTCAGGATCCTGAGTGGACTCTGGCCGGTCTACAGCGGCGTGCTCTACAAACCCTCACCCGATCACATGTTTTACATACCTCAAAGGCCTTATATGTCGGTGGGAACGCTGCGAGATCAAGTGATTTATCCTCATTCTGTTCAGGAGATGCAGGAGAAGGGCATTACTGACCGGCAGCTGGAGGAAATCCTGCAAACCGTGAGCCTCCGTTATATCCTGGAGAGAGAGGGAGGCTGGGATGCAGTGAGCGACTGGAAGGATGTGTTGTCTGGAGGAGAGAAGCAGCGGATGGGCATGGCAAGGATGTTTTACCATAAGCCTCAGTACGCCCTCCTGGATGAGTGCACGAGCGCTGTGAGTATTGATGTGGAGGGCAAAATCTTTGAAGCCGCAAAGGATGCCGGGATTTCGCTCCTCTCCATTACTCACCGTCCTTCTCTCTGGAAGTACCACTCGCACCTGCTGCAGTTCGACGGCGAGGGCGGTTGGCGCTTCGAGAAGCTGGACGCCTCCACACGTATCTCCCTGCAGGACGAGAAGATCCGACTGGAGACCCAGCTCTCAGGAATCCCCAAGATGCAGCAGCGGCTGACAGAGCTGTGCCGGATTCTGGGGGAGGACAGCAGCCTGCCGACCCCAGGGGACGAGGAGGAGGACGAGGAGGAGGACGAGAAGCAGACGGAGAGAGATGTACAGTCTGCTGGGAAAGAGAAAGACCTTATGGAGTGATTTGCAGGCAGATGACAGATGT

Function

symbol description
abcd1 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and long-chain fatty acid transporter activity. Involved in motor behavior and swimming behavior. Acts upstream of or within several processes, including oligodendrocyte development; positive regulation of myelination; and very long-chain fatty acid metabolic process. Predicted to be located in peroxisome. Predicted to be active in peroxisomal membrane. Is expressed in central nervous system; floor plate; gut; interrenal gland; and pronephros. Used to study adrenoleukodystrophy. Human ortholog(s) of this gene implicated in adrenoleukodystrophy. Orthologous to several human genes including ABCD1 (ATP binding cassette subfamily D member 1).

GO:

id name namespace
GO:0000038 very long-chain fatty acid metabolic process biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0042760 very long-chain fatty acid catabolic process biological_process
GO:0061744 motor behavior biological_process
GO:0015910 long-chain fatty acid import into peroxisome biological_process
GO:0007031 peroxisome organization biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0055085 transmembrane transport biological_process
GO:0031643 positive regulation of myelination biological_process
GO:0030301 cholesterol transport biological_process
GO:0030325 adrenal gland development biological_process
GO:0036269 swimming behavior biological_process
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0005324 long-chain fatty acid transporter activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko04146 Peroxisome
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050517-27 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and long-chain fatty acid transporter activity. Involved in motor behavior and swimming behavior. Acts upstream of or within several processes, including oligodendrocyte development; positive regulation of myelination; and very long-chain fatty acid metabolic process. Predicted to be located in peroxisome. Predicted to be active in peroxisomal membrane. Is expressed in central nervous system; floor plate; gut; interrenal gland; and pronephros. Used to study adrenoleukodystrophy. Human ortholog(s) of this gene implicated in adrenoleukodystrophy. Orthologous to several human genes including ABCD1 (ATP binding cassette subfamily D member 1).

Ensembl:

ensembl_id ENSDARG00000074876

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069545 False 1992 mRNA 0.50 8 8046086 8078618
TCONS_00069546 True 2341 mRNA 0.53 10 8046086 8084343

Neighbor

gene id symbol gene type direction distance location
XLOC_035438 si:ch211-169p10.1 coding upstream 11108 7975745 ~ 8034978 (+)
XLOC_035437 mbd1a coding upstream 133150 7875110 ~ 7912936 (+)
XLOC_035436 cxxc1a coding upstream 173045 7854130 ~ 7873041 (+)
XLOC_035435 NA coding upstream 196292 7824772 ~ 7849794 (+)
XLOC_035434 tfe3a coding upstream 236635 7778770 ~ 7809451 (+)
XLOC_035440 plxnb3 coding downstream 81942 8166285 ~ 8282555 (+)
XLOC_035441 srpk3 coding downstream 207149 8291492 ~ 8339372 (+)
XLOC_035442 CU928118.1 coding downstream 237139 8321482 ~ 8321596 (+)
XLOC_035443 comta coding downstream 374849 8459192 ~ 8480579 (+)
XLOC_035444 grm6a coding downstream 448064 8532407 ~ 8624008 (+)
XLOC_035432 CR385024.1 non-coding upstream 394116 7644265 ~ 7651970 (+)
XLOC_035431 NA non-coding upstream 449992 7587459 ~ 7596094 (+)
XLOC_035425 CU862015.1 non-coding upstream 952203 7086916 ~ 7093883 (+)
XLOC_035422 NA non-coding upstream 1087912 6954947 ~ 6958174 (+)
XLOC_035454 BX284664.1 non-coding downstream 1026729 9111072 ~ 9111190 (+)
XLOC_035458 NA non-coding downstream 1710525 9794868 ~ 9796429 (+)
XLOC_035459 NA non-coding downstream 1770395 9854738 ~ 9860610 (+)
XLOC_035461 CT573497.1 non-coding downstream 1809329 9893672 ~ 9893788 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_09130092_09150003 ABCD1 coding CI01000010 null 9130006 ~ 9150198 (-)
bowfin (Amia calva) AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 misc CM030126.1 CM030126.1 45576539 ~ 45584727 (+)