CI01000010_09130092_09150003 (ABCD1)


Basic Information

Item Value
gene id CI01000010_09130092_09150003
gene name ABCD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 9130006 ~ 9150198 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_09130092_09150003.mRNA
AACTTTTCTCCATTTAATTTCTTTGCTGTCTCTGAAAGTATTGACATTTCCAATAGAATGTGTTAGTTTGACATGCTGTCAATTTGCTGAAATCGCATTTATATTAGTTTACATGAATAGATATCCATATAGCTGTATACATTAGCAACCTGCTTTTCAAAAACCTTCATTTTGTATTGATAAGCTACAAACAAAATGTCTGTGTACTCAAAACTGCCCTCCCAGCTGAAAAACCCCCTTGTGAAAAAGACCATTCTCCTTCTTGTTGCGCTGTATGGGGCGAAGAAACTTTCCCCTTACGTATATGGCAAGCTGAAAGGAAGGACTGGTAAACAGGTTAAGGATACTGACCTGGTTACCTCCAATGGAGAACCCGAAGAAGTGGAAGCTGCAAGGAAAAAGAAAAGCTCCCCAGCTGTGAACCGCGAATTCTTCGAGAGGTTGATTCGTCTCTTGAAAATCCTCTTTCCTCGGCTTTTCTGCAAAGAACTTGGCCTGCTCGGTTTCCACTCTCTAGCTCTCATTTCACGCACCTTTCTCTCCATCTATGTAGCCAATTTGGATGGGCAAATTGTGAAAACCATTGTGAAGAAAGACCCCAGGGCGTTTGTGGTTGAGTTAACAAAATGGCTGCTCATTGCCATTCCGGCCACGTTTGTGAACAGTGCCATCCGTTACCTGGAGGGTCAGCTCAGCCTGGCCTTCCGCACCCGGTTGGTCACCCATGCCTACATGATGTATTTCAATGATCAGACATATTACCGTGTCAGCAACATGGATGGCAGGTTGGCAAACCCTGATCAGTCCTTGACTGAAGATGTGGTGATGTTTGCTGCCTCTGTGGCTCATCTGTACTCTAACCTGACCAAGCCAATCCTCGATGTGGTGGTAACCTGTTACACACTCATTAAAACTGCTGAGTCGAAAGGTGCCAGCACCACTTGGCCCGTCATCATAGCTGGCTTTGTGGTGGCACTTACTGCCAAGGTTCTGAGAGCGTTCTCCCCACGCTTTGGTAAACTTGTGGCAGAGGAAGCCAGGAGGAAAGGCGACCTTAGATACATGCATTCTCGCATCATCGCCAACTCAGAGGAGATTGCCTTCTATGGAGGACATAAGATCGAGATGTTGCAGCTGCAGAGGAGCTACACGGCGCTGTCCGAGCAGATTAACCTGATCCTGTTCAAGAGGCTGTGGTATGTCATGCTGGAACAGTTCCTGATGAAATATCTCTGGAGCGCATCGGGCCTGGTTATGGTCGCTGTGCCCATCATCACTGCCACAGGATACTCTAAATATGATTCAGAGGATGTGAAACAGGCAGCCCTGGTGATGAAGGAGGAGGACTTGGTGAGTGAACGCACACAGGCTTTCACAACGGCCCGGAACCTTCTGAACGCTGCAGCTGATGCTGTGGAGAGGATCATGGTCTCCTACAAAGAGGTCACAGAACTGGCTGGATATACGGCTCGTGTGTATGAGATGTTCGAGGTGTTTGAGGATGTGCGTGTCGGGGTGTACCGCCGTTCGGCCACAGAGGTCAAGCCAGAAGAGACAGGAGCGGCTCAGAATGTGACGCATGGCATGAGAGTGGAGGGACCGCTGCAAATAAGAGGTCAGGTGATTGATGTGGAACAGGGTATCAAATGTGAAAACCTGCCAATAATAACTCCTACAGGGGATGTGGTGGTTTCCAGCCTGAACATACAGGTTGATGAAGGCATGCATCTGCTGATCACGGGCCCCAACGGTTGTGGAAAAAGCTCTCTGTTCAGAATCCTAAGTGGCCTCTGGCCCGTCTACAGCGGAGTGCTCTACAAGCCTTCACCCGAGCACATGTTTTACATACCTCAAAGGCCTTATATGTCGGTGGGAACGCTGAGAGATCAGGTCATCTATCCTCACTCTGTTCAGGAGATGCAGGAGAAGGGCATTTCTGACCTGCAGCTGGAGGACATACTCAAAACTGTGAACCTCTGCTACATCCTGGAGAGAGAGGGAGGTTGGGATGCACTGAACGACTGGAAGGATGTGTTGTCTGGAGGAGAGAAGCAGCGGATGGGCATGGCCAGGATGTTTTACCATAAGCCTCAATACGCCCTCCTAGACGAGTGCACGAGTGCTGTGAGTATTGATGTGGAGGGCAAAATCTTTGAAGCTGCAAAGGATGCTGGGATTGCGCTTCTCTCTATTACACACCGTCCTTCTCTCTGGAAGTACCACTCCCACCTGCTGCAGTTTGATGGCGAAGGCGGCTGGCGCTTTGAGAAGTTGGACGCCTCCACGCGTATTTCCCTGCAGGACGAGAAGCTTCGGCTCGAAACCCAGCTCTCGGGAATTCCTAAGATGCAGCAGCGGCTGAATTCTCTGGAAATCTGCGGGACCCAGGCGGCGTGTGCGTCTGCGTGTGTCTTTAGGGAAAGGGTGACAGTCGAGTTTGGGTTCTGCTGTTTTGTATCAGTTCAGCGGTGGTATTGTCAAACTTCTAAGTAGTCGCCAAGAATGCTGTAGCTCAAAACCGTTCCATGTTTTAATGCGAAATCAAAAAGGGCAAATTTGTCCTCAGTGTAGATAGTAAA

Function

symbol description
abcd1 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and long-chain fatty acid transporter activity. Involved in motor behavior and swimming behavior. Acts upstream of or within several processes, including oligodendrocyte development; positive regulation of myelination; and very long-chain fatty acid metabolic process. Predicted to be located in peroxisome. Predicted to be active in peroxisomal membrane. Is expressed in central nervous system; floor plate; gut; interrenal gland; and pronephros. Used to study adrenoleukodystrophy. Human ortholog(s) of this gene implicated in adrenoleukodystrophy. Orthologous to several human genes including ABCD1 (ATP binding cassette subfamily D member 1).

GO:

id name namespace
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05675 ABCD1, ALD; ATP-binding cassette, subfamily D (ALD), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_09130092_09150003.mRNA True 2579 mRNA 0.49 11 9130006 9150198

Neighbor

gene id symbol gene type direction distance location
CI01000010_09037913_09074257 PLXNB3 coding downstream 55749 9037873 ~ 9074257 (-)
CI01000010_09008474_09031335 SRPK3 coding downstream 98671 9008028 ~ 9031335 (-)
CI01000010_08997972_08998532 NA coding downstream 131050 8996977 ~ 8998956 (-)
CI01000010_08953769_08962470 COMTA coding downstream 167536 8953436 ~ 8962470 (-)
CI01000010_08878920_08926849 GRM7, GRM6A coding downstream 202308 8878829 ~ 8927698 (-)
CI01000010_09156775_09167053 NA coding upstream 6560 9156758 ~ 9167195 (-)
CI01000010_09219339_09232872 NA coding upstream 67608 9217806 ~ 9232959 (-)
CI01000010_09237972_09246695 CXXC1, CXXC1A coding upstream 87435 9237633 ~ 9246695 (-)
CI01000010_09270527_09286978 TFE3A coding upstream 120329 9270527 ~ 9286978 (-)
CI01000010_09291025_09309487 FGD1 coding upstream 140692 9290890 ~ 9310144 (-)
G67265 NA non-coding downstream 40177 9089575 ~ 9089829 (-)
G67262 NA non-coding downstream 41897 9087885 ~ 9088109 (-)
G67156 NA non-coding downstream 187180 8942592 ~ 8942826 (-)
G67113 NA non-coding downstream 400585 8634018 ~ 8729421 (-)
G66992 NA non-coding downstream 723261 8404540 ~ 8406745 (-)
G67213 NA non-coding upstream 1323 9151521 ~ 9153635 (-)
G67247 NA non-coding upstream 218052 9368250 ~ 9522516 (-)
G67311 NA non-coding upstream 368830 9519028 ~ 9519249 (-)
G67312 NA non-coding upstream 382610 9532808 ~ 9533184 (-)
G67242 NA non-coding upstream 412506 9562704 ~ 9564242 (-)
G67099 NA other downstream 455109 8641690 ~ 8674897 (-)
CI01000010_07880416_07900104 NA other downstream 1231888 7880375 ~ 7900104 (-)
G65453 NA other downstream 1457663 7659435 ~ 7672343 (-)
G64918 NA other downstream 3033526 6093689 ~ 6096480 (-)
G64877 NA other downstream 3212995 5916257 ~ 5917011 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 2778763 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 2814667 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035439 abcd1 coding NC_007119.7 CM002892.2 8046086 ~ 8084343 (+)