CI01000010_08878920_08926849 (GRM7, GRM6A)


Basic Information

Item Value
gene id CI01000010_08878920_08926849
gene name GRM7, GRM6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8878829 ~ 8927698 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_08878920_08926849.mRNA
AGGGACAAAATAGTCAAAATCATTGAAGAAGCACCATCTTGATTCTCATGGTGATTCATCCTATCTTTTTATTCATATACAGGTCTGTTCCTCTTTCCCCGATGGATTTCTCTTTATTGCATCTCTGAGTAACTGTAAGATCATCCTATAGAGAAGAGCATTATTCTACACACTCTCATCATCAAAGTTAACTTTTCTTGTGTTGAAGTTTTAGCTACTGGCTACATTCTCTTTCATTGTTAGCTCAATTCCGTCTTTTCTCTTGCTGCTTTCTGAACAAATTCAGTCTTTCATTGACCTTTGAACCCTTCGGAGAGGCACAAATTTCCACAGCTGGTCTAACAATCAGTACACATCAGAGCAGTTGGGATCCATTCCCTGGAGCTTCACCACACGCCAGCCTATATCACTCTCCATTCACAGTGTTTCAATGCAATGCCGTTCCCAGCGGATGCTTTGAGAATGAAACCTGTCTTCTTTAAAGCATATTGTATCTGCTTTTGTTTATGATGTGTTATACACCGTGCATGAATAGTTAGAGAGTGCTAGAAATTCAAATGACTCATTTTTTAAAGGTTTGGAAAAGTGGCACTTAAAAATGTTTTTATTTTTGTAGTGTGTTGCTGTTTGGTTGCTAGGGTGGTCTGGGTGGTTTCTAGGTGGTTACTTACTGACCCAGGTCAAACGGGCGTGCAAGACTTGCACAAGTTTAATATGTTAGAGGTATGGCTACATGATTAATTAAAAAGAAAATTGTGATATGGAAATATCCCTATTCTTCTTCATATTTTTGTTTTTCTCCAACAGGTTCCTCAGATAGTGGATGAACACTTACGTGTTTGATTCATCATGACGTCACACCCTCCTCCATTCTTACTGAACCATCAGGTCGGGATGTTCCGGGTTTTAAGCTGGAGCAGCTGTCACTCTACCACATGGCCACGCCTCTTGTGGATTCTGTGGGTGTGGCTAAGCCCGTGTTCATCGGTTCACCATCACTCGCACCCACATTCCATCAAAATCCCTGGGGACATCACCTTGGGAGGCCTTTTCCCAGTCCATTCCAGGGGTCCCGCAGGGGTCCCGTGTGGAGAAATAAAGAAAGAGAAAGGAATCCACCGGATGGAGGCCATGCTGTACGCACTGGACCAGATCAACAGTGACCCAGAACTACTGCCCAACATCACACTAGGGGCCCGGATTCTTGATACATGTTCCAGGGACACTTACGCTCTAGAGCAGTCTCTGACATTTGTCCAGGCTCTTATTCAGAAAGACACGTCTGATATTCGATGCTCCAATGGAGAACAACCAATCATACGCAAGCCTGAGCGTGTGGTGGGCGTGATAGGGGCGTCCGGCAGCTCCGTGTCCATCATGGTGGCCAATGTCCTGCGGTTGTTTGAGAGGGTCATTCTTGGTGGCTCCCTCATAGTGCAATATAAGGCTCGTCTGAGAACACATGGCTTCCTGGCATTGGACACCCTGCCCGAAAATGAGAGAATCTCTGTGACGAATGGTATGATTTGCTCCCCTGGTATCCCCCAGATCAGTTACGCCTCCACAGCACCAGAGCTGAGCGACAATAACCGCTATGACTTCTTCTCTCGTGTGGTACCACCAGACTCCTACCAGGCCCAAGCTATGGTGGACATCGTGAAAGCCCTGGGCTGGAACTATGTGTCCACTTTAGCATCAGAGGGGAATTACGGTGAAAGTGGAGTAGATGCCTTCGTTCAGATCTCTCGAGAGGCAGGAGGTCTGTGCATTGCTCAGTCCATGAAGATCCCACGAGAGCCCAAACCAGGAGAGTTTGACAAGATCATTAAGAGACTAATGGAGACCCCCAATGCTCGAGGAGTCATCATCTTCGCCCATGAGGATGACATCAAGCAGGTCCTGGAGGCCGCGAGGAAGTCCAATTTGACTGGTCATTTTAAGTTTGTGGGATCAGACAGCTGGGGTGCCAAGAGCTCTCCGATCCTGGATCAGGAGGAAGTGGCTGAGGGTGCGGTCACCATTCTGCCCAAGAGAGCATCTATTGAAGGGTTTGACCAGTACTTCATCACTCGATCCCTGGAGAACAATCGCAGGAATATCTGGTTCGCTGAATTCTGGGAGGACGACTTTAGGTGCAAACTGACACGTCCAGGTATCAAGATCGACCCAGAAAAGAAGAAATGCACAGGAGAAGAACGGATCAATCGCGATTCTCATTACGAGCAAGAGGGCAAGGTCCAGTTTGTAATTGATGCGGTGTATGCCATGGCTCATGCTTTGCACAACATGCACCAGGATCTGTGTCCGGGAGCCACAGGTGTTTGTGATAAAATGGACCCAGTGGAGGGACGTTTGCTGCTTAGCTACATCCGCGCCGTCAACTTCAATGGTAGCGCCGGCACTGCCGTTCTGTTTAATGAAAACGGTGATGCTCCTGGACGCTATGACATCTTTCAGTACCAGATGACCAACACCAGTAGTCCAGGATACAGAGTCATCGGCCAGTGGACCAATAACTTGCGACTCAATGTAGAAGAGATGCAGTGGACTGGTGGATCCCGTCAGATTCCGGACTCTGTTTGCAGTTTTCCATGCCAACCGGGTGAGAGGAAGAAGATGGTGAAGGGTGTCCCGTGCTGCTGGCACTGTGAGCTCTGTGACGGGTATCAGTTCCAAGCTGACGAGTTCAACTGCGAGATGTGCCCTTTCGACATGCGGCCGACCCTCAACCGCACGGCCTGCCGGCCAACTCCCATCATCAAGCTGGAGTGGCATTCTCCCTGGGCCGTTATCCCTCTGTTCCTGGCCATTCTTGGCATTCTGGCCACCCTGTTTGTCATCGTCACCTTCATCCGCTTCAACGACACCCCCATCGTGAGGGCCGCGGGCCGCGAGCTCAGCTACGTGCTCCTGACGGGAATCTTCCTCATCTACTTCATCACCTTCCTCATGATCGCTGAGCCGGGAACCGTGGTGTGTGCTTTCCGCAGGCTACTGCTGGGTCTGGGTATGAGCATTACATACTCCGCCATGCTCACAAAGACCAACCGGATCTACCGGATCTTCGAGCAGGGCAAGAAGTCCGTCACGCCACCAAAATTTATCAGCCCCACTTCACAACTTATGATAACCTTCATTCTGATCTCAGTACAGACTTCGACAAAATGGTGCGCAGTTTTAGACCCTGTAAATCTACAGGTTGTGGGTGTTTTCGTCTGGTTTGGCGTGATGCCGCCACACACCACCGTGGACTACGAGGAGCAGCGGCCGCCCAATCCAGAGTTGGCACGTGGCATCCTGAAGTGTGACATGTCTGATCTGTCGCTCATCTGTTGCCTGAGCTACAGCATCGTGCTGATGGTCACATGCACTGTCTACGCGGTCAAGAGCAGAGGTGTGCCTGAGACTTTCAACGAAGCTAAACCCATCGGCTTCACCATGTATACCACCTGCATCGTCTGGCTGGCGTTTGTGCCTATTTTCTTTGGCACAGCACAGTCCACTGAGAAGATGTTCATCCAGACAACGACGCTGACCGTGTCCATGAGTCTGAGTGCCTCCGTGTCCCTGGGGATGCTCTACATACCGAAAGTCTACGTCATCATCTTCCACCCGGAGCAGAACGTGCAGAAGCGCAAGCGCAGCTTCAAGGCTGTGGTGCAAGCCGCCACCATGTCCTCACGCCTCTCGCAGAAATCCATCAATGACAAGCAGAACGGAGAGACGAAGATCGAGCCAGACAGGTCACAGTAGCAGGTAACAGCCACTCTCAGACTCTTCAAAAAAAAGTCTGTTCTGAATATCCTGAGACGCCATTAAAGTCTGGAAGAATGATACAAATAAA

Function

symbol description
grm6a Predicted to enable group III metabotropic glutamate receptor activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and retinal neural layer. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1B. Orthologous to human GRM6 (glutamate metabotropic receptor 6).
grm7 Enables several functions, including adenylate cyclase inhibitor activity; amino acid binding activity; and group III metabotropic glutamate receptor activity. Involved in several processes, including adenylate cyclase-inhibiting G protein-coupled glutamate receptor signaling pathway; axon development; and sensory perception of sound. Located in cell cortex; dendrite; and plasma membrane. Is integral component of membrane. Part of receptor complex.

NR:

description
metabotropic glutamate receptor, partial

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04608 GRM6; metabotropic glutamate receptor 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_08878920_08926849.mRNA True 3844 mRNA 0.50 12 8878829 8927698

Neighbor

gene id symbol gene type direction distance location
CI01000010_08846524_08862740 USP11 coding downstream 16089 8845905 ~ 8862740 (-)
CI01000010_08836289_08837480 UXT coding downstream 41349 8836153 ~ 8837480 (-)
CI01000010_08821963_08829108 ELK1 coding downstream 49721 8820471 ~ 8829108 (-)
CI01000010_08780538_08783770 NA coding downstream 95059 8780271 ~ 8783770 (-)
CI01000010_08745022_08776416 OTUD5B, OTUD5.L, OTUD5A, OTUD5.S, OTUD5 coding downstream 101842 8744752 ~ 8776987 (-)
CI01000010_08953769_08962470 COMTA coding upstream 25738 8953436 ~ 8962470 (-)
CI01000010_08997972_08998532 NA coding upstream 69279 8996977 ~ 8998956 (-)
CI01000010_09008474_09031335 SRPK3 coding upstream 80330 9008028 ~ 9031335 (-)
CI01000010_09037913_09074257 PLXNB3 coding upstream 110175 9037873 ~ 9074257 (-)
CI01000010_09130092_09150003 ABCD1 coding upstream 202308 9130006 ~ 9150198 (-)
G67113 NA non-coding downstream 149408 8634018 ~ 8729421 (-)
G66992 NA non-coding downstream 472084 8404540 ~ 8406745 (-)
G66984 NA non-coding downstream 480089 8398519 ~ 8398740 (-)
G66980 NA non-coding downstream 489347 8389192 ~ 8389482 (-)
G66968 NA non-coding downstream 513620 8364466 ~ 8365209 (-)
G67156 NA non-coding upstream 14894 8942592 ~ 8942826 (-)
G67262 NA non-coding upstream 160187 9087885 ~ 9088109 (-)
G67265 NA non-coding upstream 161877 9089575 ~ 9089829 (-)
G67213 NA non-coding upstream 223823 9151521 ~ 9153635 (-)
G67247 NA non-coding upstream 440552 9368250 ~ 9522516 (-)
G67099 NA other downstream 203932 8641690 ~ 8674897 (-)
CI01000010_07880416_07900104 NA other downstream 980711 7880375 ~ 7900104 (-)
G65453 NA other downstream 1206486 7659435 ~ 7672343 (-)
G64918 NA other downstream 2782349 6093689 ~ 6096480 (-)
G64877 NA other downstream 2961818 5916257 ~ 5917011 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 3001263 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 3037167 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009712 LOC107584919,LOC106904750,LOC106522891 coding CM030126.1 CM030126.1 44856527 ~ 44881725 (+)