CI01000010_08846524_08862740 (USP11)


Basic Information

Item Value
gene id CI01000010_08846524_08862740
gene name USP11
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8845905 ~ 8862740 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_08846524_08862740.mRNA
ATGGCTGCGAACTGCAGCACCGGTTCGGCTACGGAGCCTCCGGGACTAGAGACCCAGTGGCGGGAGATCGACAACCTGAACCAGCAACAGCTGCGGGCCGGAGACAGCTGGTATTTGTTGGACAAGAGATGGTTTGATCAGTGGAAAGAGTATGTGCACACCGGTGACCAAAATTCGTCCTCTTATCCTGGAAAGATTGATAACACCGAGCTCTTTGAAGATTTGGATTCATACCACCTGAAAGAGAGGCTGTCTGAGAATGAGGACTTCATCCTGGTCCCATCAGAAGCCTGGCATAAACTCTTGTCATGGTATGACTTGATGGACGATCAGCCTCCTTTGGAAAGAAAGGTTGTTGATCTTCCCAGCACTGTTAAAGTGGAGGTCTACCCTGTGGAGATCTACCTCTGTCTCTCCAGTAACTTGGAGAGCACTGTAACTGCACGGTTCAGTCGAGCAGACAAGATACACGCTATACATCAAAAGATACGGCAGCATTTTAATGTGTCAGAGACTGCTGAGAGCCGACTGTGGATGAGGAGTACGGATACAAGCTCAGAAAGGCTACGCAACCTTAACATGACTGTCCTAGACGCCTGTCTCATCTCCGGCATGACGGTGATTATGGAGATCAGGAATGCGGATGGTACGTGGCCAACATCTAGGCCTCAGATCATGCGGAACACTGCTGACGAGGACTCGTATCGAGGGCCTCCTGGAGTATGTGGCCTCACGAACCTGGGCAACACCTGCTTCATGAACTCAGCTTTACAGTGTCTGAGTAACACGCCACCACTGACTGAGTACTTCCTGATGAACTTGTATCTGGAGGAGCTGAACTTCACCAACCCTCTGGGCATGAAGGGTGAAATTGCAGAAGCCTACGCAGATGTCATCAAACAAATGTGGTCAGGGAGGCACTATTCTGTGGTTCCTCGGGTATTTAAGACGAAGGTCGGCCACTTTGCATCACAGTTTCTTGGCTACCAGCAACACGACTCTCAGGAGCTGCTGTCTTTTCTGTTGGACGGTCTACATGAAGACCTCAACCGGGTCAAAAAGAAGGAGTATATTGAACTCAAGGATGCTGATGGCAGACCTGACCAGGAAGTGGCTGAGGAAGCATGGCGCAACCATCTGCGGCGGAACGATTCCGTTATTGTCGACACATTCCATGGGTTGTTTAAGTCGACACTGGTGTGCCCCGAGTGCAACAAGGTCTCTGTGACCTTTGACCCCTTCTGCTACTTGAGTGTGCCCTTACCAGTCAGTAAGGAGAGGGTCATGGAGGTGTTCTATGTCTCACTGGATCCCATGGCCAAACCAACACAGTATCGTCTGATTGTCCCTAAAGCTGGCCGAGTGATTGACTTGTGCACTGCCCTCTCTCAGGCAACAGACGTCCCACCCAGCCAGATGGCTGTGGCTGACGTGTTCAATCATCGCTTCTATAGGATTTATCAAGTTGACGAGTCCTTAAGCTGTATACTGGACCGGGACGACATATTTGTGTATCAGCTGAACAGTGGCTGTATGGATCAGACTGATGAGGAGGTGATTCTGGCCGTCTACATGCGTGAACGCTCTCATTACAGGGATTACGGCTCGGGCAGCAACAGCTACAGCACATCCCTGTTCGATGAGGGTGATGAAGACTCTGAGGAGGCGGGGCCATCTAAGAAAGAGGAAGAGACTCAACAGAGCAATCAGGCTGATGGGCAGAACAACGGCCCATTAGAAGCCAGCCCGAGCAGCGAGAGGGAGGAGCGAGCTGAGGAGGGGGAGTCGAGCAGTGAACCGGACCGGGGCAGCAGTACAGAGGAGGGCCAATCAGCGTGCGGCAGCACCGACACCAACTCCCAAGATGCCACTGATGGGGACCAAACTCAGCCATACATTGCCATCGACTGGGATCCTGACATGAAGAAGAAGTATTACAATGAGAATGAAGCTGAGAAATACATAAAGCATCAGAGCATGGATGTCCCTCACCAGCAAACAACAGTGCAGCTGCAGGAATGTATAGAGCTTTTTACCACAGTAGAGACACTGGAAGAGGAAAACCCCTGGTATTGTCCGACATGTAAAAGGCATCAGCTTGCTACTAAGAAACTGGATCTGTGGTCTTTACCAGAAGTTCTGATCATCCATTTAAAGCGTTTCTCCTACACAAAATACTCTCGAGAAAAACTGGACACTATCGTGGAGTTCCCCCTGCGGGATTTGGACTTCTCAGGTTTCCTCCTAAAGAAGACCACGAACAGTACTGAACCTCCCAGTAGATATGACCTGATCGCTGTGTCGAACCACTACGGCGGACTCCGAGATGGACACTATACTAGTTATGCCCAGAACAAGGACAATGGCCAGTGGTATTACTTTGACGACAGCAAGGTGACCTATGCAAGGGAGGAACAGATTGTGACCAGCGCGGCCTACCTCCTGTTCTACCAGCGCCAAGACAAGATCCGCCAGCCCACCGTCCCTCCACCCGTACCCTCCTCCACCCAGCCAGAGAACCACATCACATCCCAGACCCATGATGGCGTGGACGGAGCCTCTTCCTGCGAAGCACGAGGCAGGGGCTACTCTCTCAGGCTGGTGCACGAGCATCATGGGGTGGGAATGCAGATTTTTGTGTCGTTTTTCTTAATGACGAACTCAAAGAAACGGGTTAGGCTGGTGGTGGCGGATTCAGAGATGGCATACCATTTTGTCTGCATCACTTCAACGATGATGAGAATTTGGAGAATGTGGTTTGCGCTGTTCATCATCACCGAATGTGTTCTTTACTTTTTCCTAAGCTTGCTTTTTTGAGCTAGCTAAGCTGCTGTCCACAATGGTGATGTTTGAACGCCCGACCTTGGGTAAAGCTGCACTGTTTAACATCATGAATCAGGCCTCCTGTTTATTCCATCAGACGCTATTAGCAGGGATGGTTGAGATGGTTTCTCATATCAGGGACGTCATGATCAGAAATCCTGTTTCACTATGTTTTCTGAGATCTTCTAGTATAAAGGTGGTCTGTCCACTCACTCGTGATCTATTTATTTTCGTAATTGCCAGATGCTAATGTGGAGTGAGGAATAGAGATGGTTATAATTGTAAAGAGCGGCTTCTAAAGATCTTCCATTTTTATTTTCATTTTTGTGATGCTTTTTTTTGTCTGTCGTAAGGTCTGGGAAAAGCCCCTCTGTTGCAGGACACAAACGGAGGCCTGTTTTTCAGCGAGAATTTGCTTTTTTTTTTATATCTTAAATGAAAGGAAAATACACAGCAAGATTTAAATATTACATTCTTTTTTGACTAATTGTGTTACATTTATAAAGAACTCTTTGGAGCAATGAGAATATTTCAGCAAAGTGCTTTCTGGATAGAGCTCTTTACATGATGATTTTTAAGGCACCTCTGTACAGTATTTTTGTATTGTAATAAA

Function

symbol description
usp11 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human USP11 (ubiquitin specific peptidase 11).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11835 USP4_11, UBP12; ubiquitin carboxyl-terminal hydrolase 4/11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_08846524_08862740.mRNA True 3436 mRNA 0.48 21 8845905 8862740

Neighbor

gene id symbol gene type direction distance location
CI01000010_08836289_08837480 UXT coding downstream 8425 8836153 ~ 8837480 (-)
CI01000010_08821963_08829108 ELK1 coding downstream 16797 8820471 ~ 8829108 (-)
CI01000010_08780538_08783770 NA coding downstream 62135 8780271 ~ 8783770 (-)
CI01000010_08745022_08776416 OTUD5B, OTUD5.L, OTUD5A, OTUD5.S, OTUD5 coding downstream 68918 8744752 ~ 8776987 (-)
CI01000010_08740418_08742300 PIM2 coding downstream 103605 8739386 ~ 8742300 (-)
CI01000010_08878920_08926849 GRM7, GRM6A coding upstream 16089 8878829 ~ 8927698 (-)
CI01000010_08953769_08962470 COMTA coding upstream 90696 8953436 ~ 8962470 (-)
CI01000010_08997972_08998532 NA coding upstream 134237 8996977 ~ 8998956 (-)
CI01000010_09008474_09031335 SRPK3 coding upstream 145288 9008028 ~ 9031335 (-)
CI01000010_09037913_09074257 PLXNB3 coding upstream 175133 9037873 ~ 9074257 (-)
G67113 NA non-coding downstream 116484 8634018 ~ 8729421 (-)
G66992 NA non-coding downstream 439160 8404540 ~ 8406745 (-)
G66984 NA non-coding downstream 447165 8398519 ~ 8398740 (-)
G66980 NA non-coding downstream 456423 8389192 ~ 8389482 (-)
G66968 NA non-coding downstream 480696 8364466 ~ 8365209 (-)
G67156 NA non-coding upstream 79852 8942592 ~ 8942826 (-)
G67262 NA non-coding upstream 225145 9087885 ~ 9088109 (-)
G67265 NA non-coding upstream 226835 9089575 ~ 9089829 (-)
G67213 NA non-coding upstream 288781 9151521 ~ 9153635 (-)
G67247 NA non-coding upstream 505510 9368250 ~ 9522516 (-)
G67099 NA other downstream 171008 8641690 ~ 8674897 (-)
CI01000010_07880416_07900104 NA other downstream 947787 7880375 ~ 7900104 (-)
G65453 NA other downstream 1173562 7659435 ~ 7672343 (-)
G64918 NA other downstream 2749425 6093689 ~ 6096480 (-)
G64877 NA other downstream 2928894 5916257 ~ 5917011 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 3066221 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 3102125 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009714 usp11 coding CM030126.1 CM030126.1 44901426 ~ 44916843 (+)