CI01000010_08780538_08783770


Basic Information

Item Value
gene id CI01000010_08780538_08783770
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8780271 ~ 8783770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_08780538_08783770.mRNA
CTCATTAGCACAGAGCGGCAATCAGGGGAGCGATGCATCACAGACCCTGGCATAGTGGAAGATCAAACGGTAGTCCATCACCAAAGGCTCCTGTTTGAACTTATGATGTTGAAAAAAGACAAAGACAAATGCCATGTTGCATTGTTGTATGTAGGTTATTTTCCCTCCAAATGTCTTGGTTTGTATTGCAGAAAACTGAATATGTGTGTTACAGCCCCTCTGAGAGCAGTTACACTCAATGGTTACAAGATCGTGCAATTCTTCCAGGCGCACTTACATTTACGGGAAGATGGTATTGAGACGTACGGTGGAGCACACTCAGGCTTTGATGTGTGGCTCCTTTCATGTGTTTGTTGGAGCCTGCGTTTGGCAGTCTGTTTCATGTTGGCTGTGTGTCGCTGCTCCCTTGCGATTCCCTTCTGCCCTGCCCAATGTGTCTGCGAGACCCGCCCATGGTACACGCCTCAGTCGGTCTACCATCAAGCCAAGACTGTTGACTGCAACGAACTCCATTTGAGAAGAATCCCGTGGAATATTTCAATTGATACTCAGGTGCTGCTTCTTCAGAGCAACAATATCTCCAGGGTAACCACAGAACTCCAGAGTTTGGTCAACCTCACGGAACTGGATCTCTCCCAGAACCACTTCACACAAATCCAAGACGTTGGCTTGAGTAACCTAACCCAACTGGTCACACTCTACCTTGAGGAAAACCAAATTAAAGAGCTGCCTGATATATGTCTAAAGGACCTAGTCAGCTTAGAGGAGCTTTATATTAATCATAATCAGATCTCTTCTATTGGTCCTAATGCCTTTTCAGGCTTGGGGAACCTGTTGAGGCTTCACCTTAACTCCAACAAGCTTGTGGCGATAGACAGCCATTGGTTTGAGTCCCTACCCAACCTTGAGATATTAATGATAGGGGAAAACCCCATTCTTGGGCTGCAAGATATGAACTTCCACCCCCTCTCTAAATTGCACAGTCTGGTTCTTGCAGGAATGGGGCTCAGGGAAATACCTGAGGGGGCTTTCCAGGGATTAGAGTACCTCGAGAGTCTCTCGTTCTTCGATAACAAGCTCACGGCTGTGCCAAAGAAAGCCCTGCGTGTTCTACCGAGCCTCAAGTTTCTTGACCTTAACAAGAATCCTATCGTCCGTATACAGGAAGGTGACTTCAGAGACTTTCCCCACTTAGAGGAACTCAGTCTGAACAACATGGATGAACTTGTGGCGGTGGAGAAGGGCGCATTCTCAAACTTACCACAAATGGCCAAATTGGAGCTCTACAACAACCCTCAACTGTTCTTTATAGACCGAGCCGCTTTCCTGAAAATGCGCAGCTTGCGCACCTTACTGATCCACAATAATGACCTCACACTTTTGCCCCATGATATTTTATCCGCTTTCCCCAGTCTGGATGAAATCAGTCTTCATAGCAACCCACTCAGGTGTGATTGTCTCGCCAACTGGGGGCCCGTCCTGGGCAACCAATCGAGCCTCAAAGTTCTGGAGCCCCAAATAACTCTTTGTGCCTCCCCACCACATCTTGTCGGCCAATCCCTTCAGGAAGTGGTGTCTGCAAGTTGGAATGGGGCAAGCAATACCTGCCTGCCTCTGATTTCCCAGCATGCCTTCCCTCCGCTGCTCAATGTCACCTTAGGACAGCTTCTAACACTCAACTGCTGGGCTGTGGCAGATCCGGCGCCTCAGTTTTACTGGGTGACACCCACCGGTGACAAAGTCACTTCTGAAGCTGTTTCCCCATCCACGAATGAGGGAGGGGGAATGATGAAGAAGCACCGGATGCAAGAACAAGGTGCTCTTGAGATCCCACATGTCGAACCCGAGGATGCTGGTCTCTACACATGTGTTGCTTGGAATGCAGAGGGAGCCGACACCCGAAGTGTCTCAGTGTATGTGGATAGGAGCAACTGGCATGGCGGACGCTCTATTGGAGGTCATCATGGGGTGGTGAATACCACTGGATCCTTGGTAATCCTGGCAAAAATTGTCCATGCCCAGTCTGTGGTACTTGAATGGAAGGTGCACCCATCTGCTGTCTCTTCCAACCATGAGGTGGCACAACCCAAGTGGCTCAGTGCTACCGTAAAGATCGACAACCCGCAAATCAGCTACACGGCAATGGTCCCCGTAGATGTCCAAGAGTACAATCTCACACACCTCCTACCTTCCACGGAGTACCAGGTTTGCCTGACCATGGCTGGCACCGAGCAGACCCAACACTCTTGTATCAACGTGACCACCAAAGAAGCCAGCTTTGCCGTGGAGATGGTTGCCCAGCCGGCCAATGTAGCCCTGGCAGCGGTCATGGGCTCAATGTTCGCCATCTGCATCATGGCTCTGTTGGTGTTCTATATGGGACGGCGTATGAAGCAGAAATCTTGCCATCACTCTCTTAAGAAGTACATGCAGCACACCACCTCAATTCCCCTGAACGAACTCTACCCACCGCTTATTAACCTCTGGGAGAATGAGACAGAAAAAGAGAAAGAGGGCACTGCTGACCCTCAAAACTCACAGATAGACACTTCAAAAACCTACATGTGGTAGCTGCACAACAGAAAGTAGATAAAAGAGACATTTTAAACAGTATATGTACTGTGTTGTACATAAATGACAAGTATGTGTTATTGATTTGTCATTGTGAAAGATATATGTATTTTTAGATTGTACCCTTCAATGCCAAGCACACTTGGTTGCAGTTGTGATTTGTTAGACGACCAACAGACGTGGGCAGCAAAACACATTTTATGCTTTTGCATTGCATTGTATTTTCTGAGACTAATTCAACGTTAAGCATGCCAATGTGTTAATAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_08780538_08783770.mRNA True 2838 mRNA 0.48 3 8780271 8783770

Neighbor

gene id symbol gene type direction distance location
CI01000010_08745022_08776416 OTUD5B, OTUD5.L, OTUD5A, OTUD5.S, OTUD5 coding downstream 3284 8744752 ~ 8776987 (-)
CI01000010_08740418_08742300 PIM2 coding downstream 37971 8739386 ~ 8742300 (-)
CI01000010_08725595_08733769 SLC35A2 coding downstream 46502 8724967 ~ 8733769 (-)
CI01000010_08694007_08717153 BCAP31 coding downstream 63118 8693991 ~ 8717153 (-)
CI01000010_08624504_08629844 PNCK coding downstream 150427 8624342 ~ 8629844 (-)
CI01000010_08821963_08829108 ELK1 coding upstream 36701 8820471 ~ 8829108 (-)
CI01000010_08836289_08837480 UXT coding upstream 52383 8836153 ~ 8837480 (-)
CI01000010_08846524_08862740 USP11 coding upstream 62135 8845905 ~ 8862740 (-)
CI01000010_08878920_08926849 GRM7, GRM6A coding upstream 95059 8878829 ~ 8927698 (-)
CI01000010_08953769_08962470 COMTA coding upstream 169666 8953436 ~ 8962470 (-)
G67113 NA non-coding downstream 50850 8634018 ~ 8729421 (-)
G66992 NA non-coding downstream 373526 8404540 ~ 8406745 (-)
G66984 NA non-coding downstream 381531 8398519 ~ 8398740 (-)
G66980 NA non-coding downstream 390789 8389192 ~ 8389482 (-)
G66968 NA non-coding downstream 415062 8364466 ~ 8365209 (-)
G67156 NA non-coding upstream 158822 8942592 ~ 8942826 (-)
G67262 NA non-coding upstream 304115 9087885 ~ 9088109 (-)
G67265 NA non-coding upstream 305805 9089575 ~ 9089829 (-)
G67213 NA non-coding upstream 367751 9151521 ~ 9153635 (-)
G67247 NA non-coding upstream 584480 9368250 ~ 9522516 (-)
G67099 NA other downstream 105374 8641690 ~ 8674897 (-)
CI01000010_07880416_07900104 NA other downstream 882153 7880375 ~ 7900104 (-)
G65453 NA other downstream 1107928 7659435 ~ 7672343 (-)
G64918 NA other downstream 2683791 6093689 ~ 6096480 (-)
G64877 NA other downstream 2863260 5916257 ~ 5917011 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 3145191 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 3181095 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035448 si:ch211-180f4.1 coding NC_007119.7 CM002892.2 8845932 ~ 8848166 (+)