CI01000010_08694007_08717153 (BCAP31)


Basic Information

Item Value
gene id CI01000010_08694007_08717153
gene name BCAP31
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8693991 ~ 8717153 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_08694007_08717153.mRNA
ATGAGTCTTCAATGGACGGCCGTGGCTACGTTTCTGTATGCCGAGGTATTTGCGGTACTACTACTATGTGTCCCGTTCATCTCTCCAAAACGATGGAGCAAATTTTTCAAGTCTCGGCTGGTCACTGTCATTACAACGTATGGAAACACTGCCTTCATCGTCATCATTTGTATCCTTGTCTTTCTGCTCGTAGATGCGTTTAGAGAAGTGAGAAAATACAGTGTTTCAGAGAAAGTGGATCTGAGCAACAACCCTGTGGCCATCGAGCACATCCACATGAAGCTGTTCAGAGCCCAGAGGAATGAATACATCGCTGGCTTCGCTCTGCTCCTGTGTTTGCTGTTGAGACGTCTGGCCACACTGCTGTCTCAGCAGGCTACACTGATGGCCTCTAATGAAGCCTTTAAAAAGCAGGCGGAGGGAGCAAACGATGCTGCGAAGAAGTACATGGAGGAAAATGAGAAACTGCAGGAGAAACTGCGGCAAGAGGGCGTTGAAGTGCCTGAAGTGGGTGGGAAGGCCAAGGGTGGCGTGGAGGAGGATAAGAAAAATCTGACTGAAGAGGTTAGGCAACTGAAGGATGAACTTGACGCAACCAAGAAAGCTCTTCAGAAGTCTGACAGTGATGTGAAGGCCATGAAGAAGCAGGCTGAGAACCTCACAACGGAGTACGACCGTCTGCTGGAGGAACACGCCAGACTGCAGTCTGTGCACTTGACTCCTGGAAACATTAATGTTACGACCAGTGATCTTTTCAAGTGTGTATATGCGAGACAGATGTGGTGGGAGCCTGATAGACAGGCTTCTCTCGATTACATATAAATCAGCTGCTAATAAA

Function

symbol description
bcap31 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and protein localization to endoplasmic reticulum exit site. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in deafness, dystonia, and cerebral hypomyelination and sensorineural hearing loss. Orthologous to human BCAP31 (B cell receptor associated protein 31).

GO:

id name namespace
GO:0070973 protein localization to endoplasmic reticulum exit site biological_process

KEGG:

id description
K14009 BCAP31, BAP31; B-cell receptor-associated protein 31

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_08694007_08717153.mRNA True 838 mRNA 0.48 7 8693991 8717153

Neighbor

gene id symbol gene type direction distance location
CI01000010_08624504_08629844 PNCK coding downstream 64147 8624342 ~ 8629844 (-)
CI01000010_08586563_08587030 NA coding downstream 106961 8586457 ~ 8587030 (-)
CI01000010_08381760_08382057 NA coding downstream 311668 8381453 ~ 8382323 (-)
CI01000010_08341936_08349855 NA coding downstream 344111 8341359 ~ 8349880 (-)
CI01000010_08293951_08338893 GRIPAP1 coding downstream 355098 8293670 ~ 8338893 (-)
CI01000010_08725595_08733769 SLC35A2 coding upstream 7814 8724967 ~ 8733769 (-)
CI01000010_08740418_08742300 PIM2 coding upstream 22233 8739386 ~ 8742300 (-)
CI01000010_08745022_08776416 OTUD5B, OTUD5.L, OTUD5A, OTUD5.S, OTUD5 coding upstream 27599 8744752 ~ 8776987 (-)
CI01000010_08780538_08783770 NA coding upstream 63118 8780271 ~ 8783770 (-)
CI01000010_08821963_08829108 ELK1 coding upstream 103318 8820471 ~ 8829108 (-)
G66992 NA non-coding downstream 287246 8404540 ~ 8406745 (-)
G66984 NA non-coding downstream 295251 8398519 ~ 8398740 (-)
G66980 NA non-coding downstream 304509 8389192 ~ 8389482 (-)
G66968 NA non-coding downstream 328782 8364466 ~ 8365209 (-)
G66915 NA non-coding downstream 403065 8288166 ~ 8290926 (-)
G67156 NA non-coding upstream 225439 8942592 ~ 8942826 (-)
G67262 NA non-coding upstream 370732 9087885 ~ 9088109 (-)
G67265 NA non-coding upstream 372422 9089575 ~ 9089829 (-)
G67213 NA non-coding upstream 434368 9151521 ~ 9153635 (-)
G67247 NA non-coding upstream 651097 9368250 ~ 9522516 (-)
G67099 NA other downstream 19094 8641690 ~ 8674897 (-)
CI01000010_07880416_07900104 NA other downstream 795873 7880375 ~ 7900104 (-)
G65453 NA other downstream 1021648 7659435 ~ 7672343 (-)
G64918 NA other downstream 2597511 6093689 ~ 6096480 (-)
G64877 NA other downstream 2776980 5916257 ~ 5917011 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 3211808 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 3247712 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location