CI01000010_08293951_08338893 (GRIPAP1)


Basic Information

Item Value
gene id CI01000010_08293951_08338893
gene name GRIPAP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8293670 ~ 8338893 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_08293951_08338893.mRNA
GCTCAGCTCTTGGAGCTGAGAACACAGAACTACCATCTATCTGATGAGCTGCGGAAAAATACAGCGGAGCTCAACAGTGTCCGTCTGAAGACCTCGAACTTGGAGAAAGACTTTATTAAAGCACAGAAGGCTTTGAACAAGAGCAAGAAAGCACAGGAGGTAGACGCCTTACTCAATGAGAATGAGATGCTTCAGGGCAAGTTGCACAGTCAGGAAGAAGACTTCAGACTGCAGAACAGCACCCTTATGCAAGAGCTATCCAAGTTATGTTCCCAGATCGAGCAGTTAGAGTCAGAGAATCGAGGATTAAGGGAGGGTCAAGGTCTGGAAAGACCCGCCTCCAGCCCCGCCTCTGGTCCAGTGGATGCTGAGCTCCTGCGCCTACAGGCTGAAAACTCTGCCCTGCAGAAGAAATTGACAGCTCTTCAAGAGCGTGCAGATGTTACTGATGGAAAAGCAGCTCTCATTGATGGAATGACGGGCACTAACGGTGTTCAATCAGATGCCAGCAGTCACAGTGATGACCCTTCTGCCTCGGGAAATGATCAGATTGATCAGGCCGAAGTGCAAAGCGTCAAACTGGAACAGCGAGATAATGAACTGAGCGAGGTGGCATTAAAGCTTCAAACGGAAATGGAGGAGAAATGCTTACTGAGGGAACAACTCCAGACACTAGAGATGTCCAAGCAGACAGAAATCACAAAACTACAAGAAGAAAATGCTAAATTGTCTGATAAGTTGAAGAAAAAACAAGAAAGCTTCCAGCGGCTACAAGTTGAGAAGGAAGCACTTTACAATGACAGCAGGACTAAAATTAATGAGATCCAACAGAGGAAAGAGGAGGAACTCAAATCCATAAACCTTCGCGTGCAGAAATTGCAGGCAGATTTAATGGCCGCCAACCAGAACGTCACTGAACTGAAGGAGCAGTTGCAGAGCAAACACAAAGAGCATGAGATGGCCATCCATGCGCTCAAAGATCAGGTAGCGTGTCAGAGCGCGGTCAGTCAGGAGCAGGTGGAGGGCATGCTGAGTGAGAACGATGCTCTCAGGACAAATCTAGCAGCCCTAGAACAGATCCAAACAGTAAAGACTCAGGAACTGAATTTGTTGAGAGAGCAAAATCTGGCTCTCAACGCAGAGCTTCAGCAGAGGCGTACAGATCAGGAGAGCTTCCTGGCGCAGAGAGATGATCTCAACTCACAGCTACAGGAGTCAAACCGAGCAAATAGTCGACTGCTGGAGCAGCTCACTGAACTTGGTCTGGAGAAGGACAAGCTACAGCAGGAGTTAGAGGAAGCCAGAAAGGTGATGATACACAAACCCTCTTTTCTACTTTCTGATCCTTTCTCAATTCAGTCAATTCCCACTGCAGCAGATAAGCGTAAGGCCATGCTGGATGAACTGGCCATTGAGATGGCACAGGAGAAATCTCGGCACAAAGAGGAACTCAGCAACGTGCGTTTGCAGCATGAGAAGGAGGTGCTGAGCATCAGGGCACGCTACGAGAAGGAGCTCCGCGGCCTCCACGAGGAGAAGAACCGCACGGAAGAGGAGATCCGCTCACAGCTACGAGATGAGAAAGCTCGTACCAAAGAGCTGGAGGGTCTTCAGCCGTATGTAGAGGAGCTGAAAGCTCAGGTTCAGTCCATGGAGGGGACGAAGGGCTGGTTTGAACGCAGACTCAAGGAGGCCGAGGAGACCATGGAAAAAAACAAACTGGACCATGCAGAAGAGATCCAGCGGGTACAGAAAGATCACAGAGTCCAGCTGGAGGCTAAAGCTGCAGAGGTGGAGGCAGTCAAACAGCAAGTGACGGAGATGGGGAAAGAGAGAGAAGATCTCAACGACACAATCGGAAAACTCAAACAGGAGATTAAAGACACGGTGGACGGACAGAGAATCCTGGAGAAAAAAGGTAGTTCAGCGCTGAAAGACTTGAAGAGGCAGCTCCATCTGGAAAGAAAGAGAGCAGATAAACTCCAGGAGCGGCTGCAGGAGATCTTAACCAACACTAAGACTAGGACAGGTCTGGAGGAGCTGGTATTGTCTGAGATCAGTTCCCCGAGCCGTACGCAGCAGACGGGTGACAGCAGTAGCATTTCCTCCTTCAGCTACAGAGAGATCATGAAAGACGGCGCATCAGCTCCCAGCACCAATAAGTCCAACACCAGCAGCCCTCAGTCCCAGCGACCTGCTGACCTTTCAGACGACGAGGAAAAGTTTACCTCACATGGAACAGCCCAGGTTAGCCCAAGCCTTCACTCGGACACAATTCTGCTGTGTGCTCCACGGGGGGCTGTGAAACACTTGGAGGTCAGCTGTGCCTCAATGGCTGATGACATCTGTAAAAAGAGTGCCATTATTGAGACATATGTCATGGACAGCCGTAGAGAGAGGGATTGCGTAGAAGATTCTGCGGATTGTAAAAGGCACAGTTTTCCCAAGCGTTTGGCTTGCGACATTGCGCAAATCAGTCCCACAACCTTTCCAGTCGAGCGTGTGATCAGCGATCCCCTGAGTCGTGAGTCGGGAACATCTGCGTGTCTTCAGTGTACCTTCCATCCCGAATCTTCATTTGCTTTCGTGACTTGGCTTCTTAGGTTCACATCCTCTGCTGGTCCAACAGCGGAATCCCGTCTGTGCCTGGCGCCATTCCACACCTTTGAAAGCCATCGGCCCGGCATTTTCCAGCCATTAGAGCAGGGAGTCCTCTTTGTATATCTTCTTTATGTATCAGGAGGAGTTGGAGTGGTCCATGGTGCTCAGGGTGAGCGTGGAAGTTTGAGTTCTGTGCTGAGGGACTTGGTGAAACCTGGAGATGAGAATCTGCGTGAGATGAACAAAAAGCTGCAGAACATGCTGGAAGAGCAACTGACAAAGAACATGCACCTACAGAAGATGGTGTTCAATACAGCAACATGCTGGAAAACGATCCTGCAGGCTGCCGCAATAGTGAGTGCCGATGATGCGTCAAGCTTGTTAACAGCCAATTAAGCGTTCAGTTTTTCCTCCAGATGAGATGAAAAATATCTGGAGCTGCTTAAAAGCTGATGAGCTCAATCTACAGCAGTTCAAGACATGGTCACAAACTTCATGTGTTTCTGTCTCTGTATATCTGTCTGTGATGTGGCTCATCACGCCATCAAAGCCCTTGTAAAGTGTATTTTAGGTTTATATGACACTGATGCCACTTTAGAACAGCTTGAATATATGTCCCCTGATAGTTATAAAAGTCTGAATCGCATGATGTCTGTCACATTTCACACCAAAATAAA

Function

symbol description
gripap1 Predicted to be involved in neurotransmitter receptor transport, endosome to postsynaptic membrane; regulation of intracellular transport; and regulation of modification of synaptic structure. Predicted to be active in glutamatergic synapse and postsynaptic recycling endosome. Predicted to be extrinsic component of postsynaptic early endosome membrane. Orthologous to human GRIPAP1 (GRIP1 associated protein 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_08293951_08338893.mRNA True 3278 mRNA 0.49 30 8293670 8338893

Neighbor

gene id symbol gene type direction distance location
CI01000010_08187103_08253432 KCND1 coding downstream 39717 8187061 ~ 8253953 (-)
CI01000010_08159110_08177308 NA coding downstream 116362 8159100 ~ 8177308 (-)
CI01000010_08093640_08128035 NA coding downstream 165023 8093410 ~ 8128647 (-)
CI01000010_08015262_08018732 PIM1 coding downstream 274883 8013962 ~ 8018787 (-)
CI01000010_07953243_07995292 TBC1D22B coding downstream 298378 7952912 ~ 7995292 (-)
CI01000010_08341936_08349855 NA coding upstream 2466 8341359 ~ 8349880 (-)
CI01000010_08381760_08382057 NA coding upstream 42560 8381453 ~ 8382323 (-)
CI01000010_08586563_08587030 NA coding upstream 247564 8586457 ~ 8587030 (-)
CI01000010_08624504_08629844 PNCK coding upstream 285449 8624342 ~ 8629844 (-)
CI01000010_08694007_08717153 BCAP31 coding upstream 355098 8693991 ~ 8717153 (-)
G66915 NA non-coding downstream 2744 8288166 ~ 8290926 (-)
G66955 NA non-coding downstream 14997 8278470 ~ 8278673 (-)
G65588 NA non-coding downstream 160597 8132841 ~ 8133073 (-)
G65570 NA non-coding downstream 214092 8079248 ~ 8079578 (-)
G65562 NA non-coding downstream 227316 8065933 ~ 8066354 (-)
G66968 NA non-coding upstream 25573 8364466 ~ 8365209 (-)
G66980 NA non-coding upstream 50299 8389192 ~ 8389482 (-)
G66984 NA non-coding upstream 59626 8398519 ~ 8398740 (-)
G66992 NA non-coding upstream 65647 8404540 ~ 8406745 (-)
G67113 NA non-coding upstream 295125 8634018 ~ 8729421 (-)
CI01000010_07880416_07900104 NA other downstream 395552 7880375 ~ 7900104 (-)
G65453 NA other downstream 621327 7659435 ~ 7672343 (-)
G64918 NA other downstream 2197190 6093689 ~ 6096480 (-)
G64877 NA other downstream 2376659 5916257 ~ 5917011 (-)
G64564 NA other downstream 3050744 5049155 ~ 5242926 (-)
G67099 NA other upstream 302797 8641690 ~ 8674897 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 3590068 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 3625972 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location