CI01000010_07953243_07995292 (TBC1D22B)


Basic Information

Item Value
gene id CI01000010_07953243_07995292
gene name TBC1D22B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 7952912 ~ 7995292 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_07953243_07995292.mRNA
CACATGTCAGCTTTTCTTTCTCTTAGCTTACAGCCAGTATATGGAGCACAGCACCCTCCTCTGGACCCACGGAGACACCGTCCATTAAAAGACACTCCAAAGGCCAGCAGTGTGAACGCCAAATCCAAAAAACCTGCAACTTTCCACGAATTTGCCCGGAGCACCAATGATGCATGGGACATTGATGATGAAGAGGATGACGGTATGTTTAGTCTCAAACAGTACTCATCTTCCCCGGTCCAATCACGATCTACGCCTCAGACGCCCCGCCTCAAACTCTTCAAATCCCCAGAGGACACAGAGCCACTGCCCCGCCCAACAGAAAGGCAGGAACCAATCAGCACAAACCACGATCAAGATCGACTAGATGTTGAAAGTGGTCCAGCCAATGGCAGGGTGGTAAAGTCCTGTAGCGACGCCCAGCTGAATGTTAATGCAGCTCGCAATACCCTGCAGAAACAGCAGTCACTTCCTGTGCGTCCCGTCATTCCATTAGTTGCCCGCATTTCAGACCAAAATGCCTCAGGAGCTCCGCCCATGACGGTGAGAGAGAAGACTCGGTTGGATAAATTCAAGCAGTTACTTGCCAGCCCCAACACAGACCTAGAGGAGTTACGGAAGCATAGCTGGTCAGGAATCCCTCGTGAGGTTCGGCCAGTCACCTGGAGACTTTTATCGGGTTATCTTCCAGCCAATAGGGAACGCAGGGATCTGGTTCTCCAGAGGAAGAGGGAGGAGTATTTCGGCTTCATTGAGCAGTATTACCACTCCAGAACAGATGATAACCACAGAGACACATACAGACAGATTCACATCGATATCCCGAGGACAAACCCTTTGATTCCTTTGTTCCAGCAGCCGCTGGTGCAGGAGGTGTTTGAGCGGATTCTGTTCATCTGGGCCATCCGTCACCCCGCTAGTGGATACGTGCAGGGCATTAACGACCTGGTCACACCTTTTTTTGTGGTCTTCCTCTCTGAATTTGTAGAAAAGAGGAAGAGAGAGAGAGATCAAGAGATGGAGGACTACATTAGTTGTGCGGTGGAGGAAGATGTGGAAAATTTTGAAATGGCAAGCTTACCACTGGATACACAACGAAACATCGAAGCCGACAGCTTTTGGTGCATGAGCAAATTGCTGGATGGGATACAGGACAACTACACGTTCGCCCAGCCTGGCATTCAGATTAAAGTGAAAGCGCTGGAAGAGCTTGTCAGCAGAATAGATGAGGATGTCCATGTGCACTTTCAGAGGTGTGAGGTGGAGTATCTGCAGTTTGCTTTCCGCTGGATGAATAATCTGCTGATGAGAGAGCTGCCGCTGCGCTGTACCATTCGCCTGTGGGACACATACCAGGCATTTTCACAGTGGGGTCAGGGTTGGGGTCCTTCCTGTAATTGCACGTTTGGCACAAAGACTCACTCCTCAAGATCAATTAGAGGTGCACAAAGAGCTCAGGCCAGAAAGAAAGAGATGTGGGCGGAGTCAGAGGGATTCTCCCATTTCCACCTCTACGTGTGTGCCGCCTTCCTCATCAAATGGCGTAAAGAGATCCTCTCCATGGCGGACTTTCAGTCTTCTGGTGTTTTAACCGTACATAAGAGCACATTGAGGAGCCTGCTAATACTCCTGCAGAACCTTCCCACAATACACTGGGGTAACGAAGAAGTGGGTTTACTACTGGCAGAGGCCTACAGACTCAAATACATGTTTGCTGATGCTCCGAGCCACTACAAGAGATGAGAACCCATAACTGGACCACAGCGAGACTCCGCAAACCCAGACGATGATCTGACCTAACGACACTTCTTCACTCGGTTTAATCTGACACAGTGAAGTTAGAGCTCACCAATTTTCGCCAATGACGTCAAATTTGTGTCATCGTCTGTTACAATTCACAATCAAGAATGAGACGGAGTAAACAACCATGAACAAAACAGATATTTTGGAAAAAAAACTGCAATCTTGATGGTTGACAGTTCAATTTGCCTGCAGATGACTTCAGAAGATAACTGACAATGAGATGCCAAGAGCTGAGGAAAGAAAAACGCTTATGTGAGCGTATCAGAATAAA

Function

symbol description
tbc1d22b Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D22B (TBC1 domain family member 22B).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0031338 regulation of vesicle fusion biological_process

KEGG:

id description
K20360 TBC1D22, GYP1; TBC1 domain family member 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_07953243_07995292.mRNA True 2074 mRNA 0.48 16 7952912 7995292

Neighbor

gene id symbol gene type direction distance location
CI01000010_07906951_07944215 NA coding downstream 8436 7906883 ~ 7944476 (-)
CI01000010_07880416_07900104 NA coding downstream 52808 7880375 ~ 7900104 (-)
CI01000010_07784276_07792092 MK13, MAPK13 coding downstream 160820 7784276 ~ 7792092 (-)
CI01000010_07775590_07780861 NA coding downstream 171740 7775404 ~ 7781172 (-)
CI01000010_07758998_07771497 BRPF3, BRPF3B coding downstream 181090 7758422 ~ 7771822 (-)
CI01000010_08015262_08018732 PIM1 coding upstream 18670 8013962 ~ 8018787 (-)
CI01000010_08093640_08128035 NA coding upstream 98118 8093410 ~ 8128647 (-)
CI01000010_08159110_08177308 NA coding upstream 163808 8159100 ~ 8177308 (-)
CI01000010_08187103_08253432 KCND1 coding upstream 191769 8187061 ~ 8253953 (-)
CI01000010_08293951_08338893 GRIPAP1 coding upstream 298378 8293670 ~ 8338893 (-)
G65497 NA non-coding downstream 136005 7816699 ~ 7816907 (-)
G65482 NA non-coding downstream 144143 7768507 ~ 7808769 (-)
G65483 NA non-coding downstream 183387 7769118 ~ 7769525 (-)
G65453 NA non-coding downstream 280795 7659435 ~ 7672343 (-)
G65427 NA non-coding downstream 322606 7629315 ~ 7630306 (-)
G65552 NA non-coding upstream 13159 8008451 ~ 8008942 (-)
G65562 NA non-coding upstream 70641 8065933 ~ 8066354 (-)
G65570 NA non-coding upstream 83956 8079248 ~ 8079578 (-)
G65588 NA non-coding upstream 137549 8132841 ~ 8133073 (-)
G66955 NA non-coding upstream 283178 8278470 ~ 8278673 (-)
G64918 NA other downstream 1856432 6093689 ~ 6096480 (-)
G64877 NA other downstream 2035901 5916257 ~ 5917011 (-)
G64564 NA other downstream 2709986 5049155 ~ 5242926 (-)
G67099 NA other upstream 646398 8641690 ~ 8674897 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 3933669 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 3969573 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location