CI01000010_08187103_08253432 (KCND1)


Basic Information

Item Value
gene id CI01000010_08187103_08253432
gene name KCND1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8187061 ~ 8253953 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_08187103_08253432.mRNA
AGAATGGACGCAGTTGAGGGGAAATAGTCTCTTGCTAACTTCAGAAATCCTCATCACTGACTAATAAAAATTTGAAACGGCACAGCGCAGCAACAAATCAGTATTCTCCAGCAGAGCCTGCAAGATATGGCCAAGAGGGTTAACCCTTTAGATGGCTGAACTGATTCTTTGAACAGCCACAATCTGCAAACAAATGACTTGAATTGATGAATTTTAATGGGTTATTTCAGGATCATTTTTAATAAATGGAGATCCTGAGATTCAAATGACTTTGACACTTTGACAGTCCCAAATTTTTGTAGCAGATAATGAAAACATTCGCCTACTTCCATTTACCTCAGAGGATTCCTTCCTAGTGTTTTAGATGTACAGACCAACCGAGAGACTTAACTAGTCTGAGATCCTCAGCTCGGATGATTAGCTTGGAAAGACTTTTTCTGGTCCAGAAAGGTTCAGAAAATCTTCTCAGGGCTGACTTTGCATATTTGATTCAGTAACAACGTATAGCCTCCAAATTAAAGATGGCTGCCGGAGTGGCAACATGGCTACCGTTTGCCAGGGCAGCGGCTGTTGGCTGGCTTCCTCTGGCCAAGAAGACCATGCCCAAACCGCCCGTGGACAAAAAGAGCCGCAACGACGAGATCCTCTTTGTAAACGTGAGCGGGCTCCGTTTCCAGACATGGAAAAACACGCTGGACCGCTATCCCGACACTCTGCTGGGCAGCTCGGAAAAGGAGTTTTTCTTCAACGAGGACACTCAGGAGTATTTCTTCGACAGGGACCCAGAGATGTTTCGCCACATTTTGAACTTCTACCGTACGGGTAAGCTTCACTACCCCCGGCAGGAGTGCATTCAGGCCTTCGATGAGGAGCTGGCGTTTTACGGCATCGTGCCGGACATTATCGGAGACTGCTGCATGGAAGAGTACAGGGACCGCAAGAAGGAGAACCAGGAGCGTCTGGCTGAGGACACAGAGGCCGAGATGGCGACAGACACCCCTCTGCCGCCTCACAGCACATCTCGGGAGCGCTTGTGGCGCGCCTTCGAGAACCCCCACACAAGCACCATGGCGCTCGTTTTCTACTACGTCACGGGTTTCTTCATCGCCGTCTCAGTTATAGCGAACGTAGTGGAAACTGTTCCATGCCGACCCCTCAAAGGCAGCAAGAAAGACTTGCCGTGTGGTGAGAAGTATTCGCTGGCGTTTTTCTGCATGGACACGGCCTGCGTGCTCATCTTCACGTTCGAGTACCTCATGAGGCTTTTCGCCGCGCCCAGCCGCTGCAAGTTCATGCGCTCAGTCATGAGCGTAATCGACGTTGTCGCCATCATGCCCTACTACATCGGCCTGGTCATGCCTGAGAACGAGGACGTGAGTGGCGCGTTTGTCACATTGAGGGTGTTCCGCGTCTTCCGGATCTTCAAGTTTTCACGTCACTCTCAGGGCCTGCGGATCCTGGGTTATACTCTGAAGAGCTGTGCTTCTGAGCTGGGCTTCCTCCTGTTTTCCCTTACCATGGCCATCATCATATTTGCAACCGTCATGTTCTACGCCGAGAAAGGCACCAAGGGAACCAACTTCACCAGCATCCCAGCCTCCTTCTGGTACACCATAGTCACCATGACAACACTTGGGTGTCTCGGGTTGTCTGACTCGGAGAGATCGCTCTTAAAAGCTCAAGTAGTGTCTCAAACATTCTGCCAATTCTACCACACTTCCAGCTTGTTGGAGTGGTCCGACAACGGTGCTGCAGTTACTCCAGCCATCGGCTCTGGGCCGTTCGCCAAGCAGCCGGCATCGTCTTGGGTTGCATTTGCCCCTCCTGAAACAGGGGTATGGTATGGAGACATGGTTCCAAACACCATCGCCGGAAAGATCTTCGGCTCTATCTGCTCTCTCAGTGGCGTGCTGGTTATCGCCCTTCCTGTACCCGTCATTGTATCTAACTTCAGCCGGATCTACCATCAGAACCAGAGAGCTGACAAGATGAGAGCCCAGCAGAAAGTCCGACTTGCGAGGATTCGCTTGGCCAAGAAGGGAACCACCAACGCCTTCCTACAATACAAAGAAGAAGGAGGATTTCAGTTTCGAGAGAGTGACAGTGCTCTGTGTCTGAAGAACAGATCTTCCTTTGAGCACCAACATCATCATCTGCTACATTGTCTGGAAAAGACAACCAATCATGAGTTCACAGATGAGCTGACGTTCAGTGAGATGTGTATGACTGAGTCAGTAGGCTATCGTACCAGCCGCAGCACTTCCATCTCCAGCCAGCAGGGGGTGACGACATCCTGCTGCCCACGCAGAGCTAAGAGAAGAGCCATCCGCCTCGCCAACTCCACCGTATCCGTCAGCCGGGGCAGCGTACAGGAGCTGGACACTCTGCAAGTGCATAAAACCTCTGCTGGAACACAAAGCTTCATAAAACAGTGTGAAGTGGTAAATTTAGTCATTGGTCAGGCACCTGCTCATTTTCGGCAGGGGGTTTTGGATGAAACGGCTCCTGGTAGAAGATTAAAGAGTTAGATATCAAAAGCACAGAGGTGTAAAGTCTATTCCACAAATAAA

Function

symbol description
kcnd1 Predicted to enable A-type (transient outward) potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in cell projection and membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in dendritic spine; postsynaptic density; and postsynaptic membrane. Predicted to be integral component of membrane. Orthologous to human KCND1 (potassium voltage-gated channel subfamily D member 1).

GO:

id name namespace
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K04891 KCND1, KV4.1; potassium voltage-gated channel Shal-related subfamily D member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_08187103_08253432.mRNA True 2570 mRNA 0.50 8 8187061 8253953

Neighbor

gene id symbol gene type direction distance location
CI01000010_08159110_08177308 NA coding downstream 9753 8159100 ~ 8177308 (-)
CI01000010_08093640_08128035 NA coding downstream 58414 8093410 ~ 8128647 (-)
CI01000010_08015262_08018732 PIM1 coding downstream 168274 8013962 ~ 8018787 (-)
CI01000010_07953243_07995292 TBC1D22B coding downstream 191769 7952912 ~ 7995292 (-)
CI01000010_07906951_07944215 NA coding downstream 242585 7906883 ~ 7944476 (-)
CI01000010_08293951_08338893 GRIPAP1 coding upstream 39717 8293670 ~ 8338893 (-)
CI01000010_08341936_08349855 NA coding upstream 87406 8341359 ~ 8349880 (-)
CI01000010_08381760_08382057 NA coding upstream 127500 8381453 ~ 8382323 (-)
CI01000010_08586563_08587030 NA coding upstream 332504 8586457 ~ 8587030 (-)
CI01000010_08624504_08629844 PNCK coding upstream 370389 8624342 ~ 8629844 (-)
G65588 NA non-coding downstream 53988 8132841 ~ 8133073 (-)
G65570 NA non-coding downstream 107483 8079248 ~ 8079578 (-)
G65562 NA non-coding downstream 120707 8065933 ~ 8066354 (-)
G65552 NA non-coding downstream 178119 8008451 ~ 8008942 (-)
G65497 NA non-coding downstream 370154 7816699 ~ 7816907 (-)
G66955 NA non-coding upstream 24517 8278470 ~ 8278673 (-)
G66915 NA non-coding upstream 34213 8288166 ~ 8290926 (-)
G66968 NA non-coding upstream 110513 8364466 ~ 8365209 (-)
G66980 NA non-coding upstream 135239 8389192 ~ 8389482 (-)
G66984 NA non-coding upstream 144566 8398519 ~ 8398740 (-)
CI01000010_07880416_07900104 NA other downstream 288943 7880375 ~ 7900104 (-)
G65453 NA other downstream 514718 7659435 ~ 7672343 (-)
G64918 NA other downstream 2090581 6093689 ~ 6096480 (-)
G64877 NA other downstream 2270050 5916257 ~ 5917011 (-)
G64564 NA other downstream 2944135 5049155 ~ 5242926 (-)
G67099 NA other upstream 387737 8641690 ~ 8674897 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 3675008 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 3710912 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009632 kcnd1,LOC107601760,LOC107584898 coding CM030126.1 CM030126.1 43051273 ~ 43052391 (+)