Gene
RNA
| Item | Value |
|---|---|
| gene id | G66915 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000010 |
| NCBI id | null |
| chromosome length | 12265998 |
| location | 8288166 ~ 8290926 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU76244 | False | 2083 | lncRNA | 0.39 | 1 | 8288166 | 8290248 |
| TU76241 | False | 884 | lncRNA | 0.34 | 1 | 8289365 | 8290248 |
| TU76243 | False | 1562 | lncRNA | 0.36 | 1 | 8289365 | 8290926 |
| TU76242 | True | 580 | lncRNA | 0.38 | 1 | 8290347 | 8290926 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000010_08187103_08253432 | KCND1 | coding | downstream | 34213 | 8187061 ~ 8253953 (-) |
| CI01000010_08159110_08177308 | NA | coding | downstream | 110858 | 8159100 ~ 8177308 (-) |
| CI01000010_08093640_08128035 | NA | coding | downstream | 159519 | 8093410 ~ 8128647 (-) |
| CI01000010_08015262_08018732 | PIM1 | coding | downstream | 269379 | 8013962 ~ 8018787 (-) |
| CI01000010_07953243_07995292 | TBC1D22B | coding | downstream | 292874 | 7952912 ~ 7995292 (-) |
| CI01000010_08293951_08338893 | GRIPAP1 | coding | upstream | 2744 | 8293670 ~ 8338893 (-) |
| CI01000010_08341936_08349855 | NA | coding | upstream | 50433 | 8341359 ~ 8349880 (-) |
| CI01000010_08381760_08382057 | NA | coding | upstream | 90527 | 8381453 ~ 8382323 (-) |
| CI01000010_08586563_08587030 | NA | coding | upstream | 295531 | 8586457 ~ 8587030 (-) |
| CI01000010_08624504_08629844 | PNCK | coding | upstream | 333416 | 8624342 ~ 8629844 (-) |
| G66955 | NA | non-coding | downstream | 9493 | 8278470 ~ 8278673 (-) |
| G65588 | NA | non-coding | downstream | 155093 | 8132841 ~ 8133073 (-) |
| G65570 | NA | non-coding | downstream | 208588 | 8079248 ~ 8079578 (-) |
| G65562 | NA | non-coding | downstream | 221812 | 8065933 ~ 8066354 (-) |
| G65552 | NA | non-coding | downstream | 279224 | 8008451 ~ 8008942 (-) |
| G66968 | NA | non-coding | upstream | 73540 | 8364466 ~ 8365209 (-) |
| G66980 | NA | non-coding | upstream | 98266 | 8389192 ~ 8389482 (-) |
| G66984 | NA | non-coding | upstream | 107593 | 8398519 ~ 8398740 (-) |
| G66992 | NA | non-coding | upstream | 113614 | 8404540 ~ 8406745 (-) |
| G67113 | NA | non-coding | upstream | 343092 | 8634018 ~ 8729421 (-) |
| CI01000010_07880416_07900104 | NA | other | downstream | 390048 | 7880375 ~ 7900104 (-) |
| G65453 | NA | other | downstream | 615823 | 7659435 ~ 7672343 (-) |
| G64918 | NA | other | downstream | 2191686 | 6093689 ~ 6096480 (-) |
| G64877 | NA | other | downstream | 2371155 | 5916257 ~ 5917011 (-) |
| G64564 | NA | other | downstream | 3045240 | 5049155 ~ 5242926 (-) |
| G67099 | NA | other | upstream | 350764 | 8641690 ~ 8674897 (-) |
| CI01000010_11929215_11933223 | DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L | other | upstream | 3638035 | 11928448 ~ 11933343 (-) |
| CI01000010_11965317_11969111 | NA | other | upstream | 3673939 | 11964865 ~ 11969710 (-) |
