RNA id: TU76242


Basic Information

Item Value
RNA id TU76242
length 580
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G66915
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8288166 ~ 8290926 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCCTTCTGAAGTGAAGCAATGGGTAGAAAAAATATCCATATTTGAAACTTAATAAAAATATATATATATATATATATATATTAACTAGCTTTTAGCAGAAGACCGTACACATCGATTTGTGGCGGAAGAGTAACCTCTGACCCTACGCATGACGTAATGACGAACGCATAAGCGCAGAGGATAGAGCAAAACTAAACACTGGTCACGAATTTAGAAGACTAAAATTAGAAATTTTAAAGAGAAATGTCGGAGGATTTCGATATAAGAGAAGAGGAGCTTGAGTTTGTTGCCCAGCCCTATTTGTTTAAGCCACGAGAGGTGTCTAAGCTTACGATACTCATACATCCTGCATCATACATCACGTCAGGGGGTTACTCATTTGGTCAACTTGCGCAGTATGCGTACGGTCGTCTGAGGGAAGCTAGTTATTTTACTTTATAAAGTTTTAAATATGGATATTTTTCTTACTAAAACCCATCGCTTCACTTCACAAGGCCTTTATTAACCACCTGGAGCTATATGGATTTTATTTATGATGGATGGATGCATTTTTTGGCCTTTAAAATCGGGCCCCCCCTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76244 lncRNA downstream 99 8288166 ~ 8290248 (-) False G66915
TU76241 lncRNA downstream 99 8289365 ~ 8290248 (-) False G66915
TU76289 lncRNA downstream 11674 8278470 ~ 8278673 (-) True G66955
TU74644 lncRNA downstream 157274 8132841 ~ 8133073 (-) True G65588
TU74626 lncRNA downstream 210769 8079248 ~ 8079578 (-) True G65570
TU76303 lncRNA upstream 73540 8364466 ~ 8365209 (-) True G66968
TU76316 lncRNA upstream 98266 8389192 ~ 8389482 (-) True G66980
TU76320 lncRNA upstream 107593 8398519 ~ 8398740 (-) True G66984
TU76328 lncRNA upstream 113614 8404540 ~ 8406745 (-) True G66992
TU76459 lncRNA upstream 343092 8634018 ~ 8729421 (-) True G67113
CI01000010_08187103_08253432.mRNA mRNA downstream 36394 8187061 ~ 8253953 (-) True CI01000010_08187103_08253432
CI01000010_08159110_08177308.mRNA mRNA downstream 113039 8159100 ~ 8177308 (-) True CI01000010_08159110_08177308
CI01000010_08093640_08128035.mRNA mRNA downstream 161700 8093410 ~ 8128647 (-) True CI01000010_08093640_08128035
CI01000010_08015262_08018732.mRNA mRNA downstream 271560 8013962 ~ 8018787 (-) True CI01000010_08015262_08018732
CI01000010_07953243_07995292.mRNA mRNA downstream 295055 7952912 ~ 7995292 (-) True CI01000010_07953243_07995292
CI01000010_08293951_08338893.mRNA mRNA upstream 2744 8293670 ~ 8338893 (-) True CI01000010_08293951_08338893
CI01000010_08341936_08349855.mRNA mRNA upstream 50433 8341359 ~ 8349880 (-) True CI01000010_08341936_08349855
CI01000010_08381760_08382057.mRNA mRNA upstream 90527 8381453 ~ 8382323 (-) True CI01000010_08381760_08382057
CI01000010_08586563_08587030.mRNA mRNA upstream 295531 8586457 ~ 8587030 (-) True CI01000010_08586563_08587030
CI01000010_08624504_08629844.mRNA mRNA upstream 333416 8624342 ~ 8629844 (-) True CI01000010_08624504_08629844
TU74478 other downstream 392229 7842636 ~ 7873650 (-) True G65441
TU74496 other downstream 618004 7663691 ~ 7672343 (-) False G65453
TU73887 other downstream 2193867 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 2373336 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 3047421 5049155 ~ 5242926 (-) True G64564
TU76444 other upstream 350764 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 3638035 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 3673939 11968202 ~ 11968254 (-) True G67957

Expression Profile