RNA id: CI01000010_07953243_07995292.mRNA


Basic Information

Item Value
RNA id CI01000010_07953243_07995292.mRNA
length 2074
RNA type mRNA
GC content 0.48
exon number 16
gene id CI01000010_07953243_07995292
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 7952912 ~ 7995292 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACATGTCAGCTTTTCTTTCTCTTAGCTTACAGCCAGTATATGGAGCACAGCACCCTCCTCTGGACCCACGGAGACACCGTCCATTAAAAGACACTCCAAAGGCCAGCAGTGTGAACGCCAAATCCAAAAAACCTGCAACTTTCCACGAATTTGCCCGGAGCACCAATGATGCATGGGACATTGATGATGAAGAGGATGACGGTATGTTTAGTCTCAAACAGTACTCATCTTCCCCGGTCCAATCACGATCTACGCCTCAGACGCCCCGCCTCAAACTCTTCAAATCCCCAGAGGACACAGAGCCACTGCCCCGCCCAACAGAAAGGCAGGAACCAATCAGCACAAACCACGATCAAGATCGACTAGATGTTGAAAGTGGTCCAGCCAATGGCAGGGTGGTAAAGTCCTGTAGCGACGCCCAGCTGAATGTTAATGCAGCTCGCAATACCCTGCAGAAACAGCAGTCACTTCCTGTGCGTCCCGTCATTCCATTAGTTGCCCGCATTTCAGACCAAAATGCCTCAGGAGCTCCGCCCATGACGGTGAGAGAGAAGACTCGGTTGGATAAATTCAAGCAGTTACTTGCCAGCCCCAACACAGACCTAGAGGAGTTACGGAAGCATAGCTGGTCAGGAATCCCTCGTGAGGTTCGGCCAGTCACCTGGAGACTTTTATCGGGTTATCTTCCAGCCAATAGGGAACGCAGGGATCTGGTTCTCCAGAGGAAGAGGGAGGAGTATTTCGGCTTCATTGAGCAGTATTACCACTCCAGAACAGATGATAACCACAGAGACACATACAGACAGATTCACATCGATATCCCGAGGACAAACCCTTTGATTCCTTTGTTCCAGCAGCCGCTGGTGCAGGAGGTGTTTGAGCGGATTCTGTTCATCTGGGCCATCCGTCACCCCGCTAGTGGATACGTGCAGGGCATTAACGACCTGGTCACACCTTTTTTTGTGGTCTTCCTCTCTGAATTTGTAGAAAAGAGGAAGAGAGAGAGAGATCAAGAGATGGAGGACTACATTAGTTGTGCGGTGGAGGAAGATGTGGAAAATTTTGAAATGGCAAGCTTACCACTGGATACACAACGAAACATCGAAGCCGACAGCTTTTGGTGCATGAGCAAATTGCTGGATGGGATACAGGACAACTACACGTTCGCCCAGCCTGGCATTCAGATTAAAGTGAAAGCGCTGGAAGAGCTTGTCAGCAGAATAGATGAGGATGTCCATGTGCACTTTCAGAGGTGTGAGGTGGAGTATCTGCAGTTTGCTTTCCGCTGGATGAATAATCTGCTGATGAGAGAGCTGCCGCTGCGCTGTACCATTCGCCTGTGGGACACATACCAGGCATTTTCACAGTGGGGTCAGGGTTGGGGTCCTTCCTGTAATTGCACGTTTGGCACAAAGACTCACTCCTCAAGATCAATTAGAGGTGCACAAAGAGCTCAGGCCAGAAAGAAAGAGATGTGGGCGGAGTCAGAGGGATTCTCCCATTTCCACCTCTACGTGTGTGCCGCCTTCCTCATCAAATGGCGTAAAGAGATCCTCTCCATGGCGGACTTTCAGTCTTCTGGTGTTTTAACCGTACATAAGAGCACATTGAGGAGCCTGCTAATACTCCTGCAGAACCTTCCCACAATACACTGGGGTAACGAAGAAGTGGGTTTACTACTGGCAGAGGCCTACAGACTCAAATACATGTTTGCTGATGCTCCGAGCCACTACAAGAGATGAGAACCCATAACTGGACCACAGCGAGACTCCGCAAACCCAGACGATGATCTGACCTAACGACACTTCTTCACTCGGTTTAATCTGACACAGTGAAGTTAGAGCTCACCAATTTTCGCCAATGACGTCAAATTTGTGTCATCGTCTGTTACAATTCACAATCAAGAATGAGACGGAGTAAACAACCATGAACAAAACAGATATTTTGGAAAAAAAACTGCAATCTTGATGGTTGACAGTTCAATTTGCCTGCAGATGACTTCAGAAGATAACTGACAATGAGATGCCAAGAGCTGAGGAAAGAAAAACGCTTATGTGAGCGTATCAGAATAAA

Function

GO:

id name namespace
GO:0031338 regulation of vesicle fusion biological_process

KEGG:

id description
K20360 TBC1D22, GYP1; TBC1 domain family member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74549 lncRNA downstream 136005 7816699 ~ 7816907 (-) True G65497
TU74534 lncRNA downstream 144143 7768507 ~ 7808769 (-) True G65482
TU74535 lncRNA downstream 183387 7769118 ~ 7769525 (-) True G65483
TU74490 lncRNA downstream 280795 7667972 ~ 7672117 (-) True G65453
TU74494 lncRNA downstream 289416 7659435 ~ 7663496 (-) False G65453
TU74608 lncRNA upstream 13159 8008451 ~ 8008942 (-) True G65552
TU74618 lncRNA upstream 70641 8065933 ~ 8066354 (-) True G65562
TU74626 lncRNA upstream 83956 8079248 ~ 8079578 (-) True G65570
TU74644 lncRNA upstream 137549 8132841 ~ 8133073 (-) True G65588
TU76289 lncRNA upstream 283178 8278470 ~ 8278673 (-) True G66955
CI01000010_07906951_07944215.mRNA mRNA downstream 8436 7906883 ~ 7944476 (-) True CI01000010_07906951_07944215
CI01000010_07880416_07900104.mRNA mRNA downstream 52808 7880375 ~ 7900104 (-) False CI01000010_07880416_07900104
CI01000010_07784276_07792092.mRNA mRNA downstream 160820 7784276 ~ 7792092 (-) True CI01000010_07784276_07792092
CI01000010_07775590_07780861.mRNA mRNA downstream 171740 7775404 ~ 7781172 (-) True CI01000010_07775590_07780861
CI01000010_07758998_07771497.mRNA mRNA downstream 181090 7758422 ~ 7771822 (-) True CI01000010_07758998_07771497
CI01000010_08015262_08018732.mRNA mRNA upstream 18670 8013962 ~ 8018787 (-) True CI01000010_08015262_08018732
CI01000010_08093640_08128035.mRNA mRNA upstream 98118 8093410 ~ 8128647 (-) True CI01000010_08093640_08128035
CI01000010_08159110_08177308.mRNA mRNA upstream 163808 8159100 ~ 8177308 (-) True CI01000010_08159110_08177308
CI01000010_08187103_08253432.mRNA mRNA upstream 191769 8187061 ~ 8253953 (-) True CI01000010_08187103_08253432
CI01000010_08293951_08338893.mRNA mRNA upstream 298378 8293670 ~ 8338893 (-) True CI01000010_08293951_08338893
TU74478 other downstream 54794 7842636 ~ 7873650 (-) True G65441
TU74496 other downstream 280569 7663691 ~ 7672343 (-) False G65453
TU73887 other downstream 1856432 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 2035901 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 2709986 5049155 ~ 5242926 (-) True G64564
TU76444 other upstream 646398 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 3933669 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 3969573 11968202 ~ 11968254 (-) True G67957

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069593 False 1508 mRNA 0.47 9 NC_007119.7 10339869 ~ 10413959 (+)