RNA id: TU74644


Basic Information

Item Value
RNA id TU74644
length 233
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G65588
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 8132841 ~ 8133073 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGGTTCTTAATACCTGGATGATCAACGACTGTATTTTTTGTTTTTTTGTTTTTGTTTTGTGATGGTTGTTCATGAGTCCCTTGTTTGTTCTGAGCAGTTAAACTGAGCTCTGTTCTTCAGAAAAATCCTCCAGGTCCTGCAGATTCTTCAGTTTTCAAGGATTTTTTTTGCATATTTCAACCCTTTCCAGAAGTGACTGTATGATTTTGAGATCCATCTTTTCACACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74626 lncRNA downstream 53263 8079248 ~ 8079578 (-) True G65570
TU74618 lncRNA downstream 66487 8065933 ~ 8066354 (-) True G65562
TU74608 lncRNA downstream 123899 8008451 ~ 8008942 (-) True G65552
TU74549 lncRNA downstream 315934 7816699 ~ 7816907 (-) True G65497
TU74534 lncRNA downstream 324072 7768507 ~ 7808769 (-) True G65482
TU76289 lncRNA upstream 145397 8278470 ~ 8278673 (-) True G66955
TU76244 lncRNA upstream 155093 8288166 ~ 8290248 (-) False G66915
TU76241 lncRNA upstream 156292 8289365 ~ 8290248 (-) False G66915
TU76243 lncRNA upstream 156292 8289365 ~ 8290926 (-) False G66915
TU76242 lncRNA upstream 157274 8290347 ~ 8290926 (-) True G66915
CI01000010_08093640_08128035.mRNA mRNA downstream 4194 8093410 ~ 8128647 (-) True CI01000010_08093640_08128035
CI01000010_08015262_08018732.mRNA mRNA downstream 114054 8013962 ~ 8018787 (-) True CI01000010_08015262_08018732
CI01000010_07953243_07995292.mRNA mRNA downstream 137549 7952912 ~ 7995292 (-) True CI01000010_07953243_07995292
CI01000010_07906951_07944215.mRNA mRNA downstream 188365 7906883 ~ 7944476 (-) True CI01000010_07906951_07944215
CI01000010_07880416_07900104.mRNA mRNA downstream 232737 7880375 ~ 7900104 (-) False CI01000010_07880416_07900104
CI01000010_08159110_08177308.mRNA mRNA upstream 26027 8159100 ~ 8177308 (-) True CI01000010_08159110_08177308
CI01000010_08187103_08253432.mRNA mRNA upstream 53988 8187061 ~ 8253953 (-) True CI01000010_08187103_08253432
CI01000010_08293951_08338893.mRNA mRNA upstream 160597 8293670 ~ 8338893 (-) True CI01000010_08293951_08338893
CI01000010_08341936_08349855.mRNA mRNA upstream 208286 8341359 ~ 8349880 (-) True CI01000010_08341936_08349855
CI01000010_08381760_08382057.mRNA mRNA upstream 248380 8381453 ~ 8382323 (-) True CI01000010_08381760_08382057
TU74478 other downstream 234723 7842636 ~ 7873650 (-) True G65441
TU74496 other downstream 460498 7663691 ~ 7672343 (-) False G65453
TU73887 other downstream 2036361 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 2215830 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 2889915 5049155 ~ 5242926 (-) True G64564
TU76444 other upstream 508617 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 3795888 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 3831792 11968202 ~ 11968254 (-) True G67957

Expression Profile